RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	B3GNT3	Q9Y2A9	372 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	MRPS2	Q9Y399	296 aa	Known RBP	11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728	CSMD2	Q7Z408	3487 aa		11.11	□□□□□ -0.63
VTI1A-208	ENST00000494728		E5RI56	91 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728		H0YGG7	62 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	AGFG2	O95081	481 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	ARF3	P61204	181 aa	Predicted RBP	11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	KLC1	Q07866	573 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	TSTA3	Q13630	321 aa	Predicted RBP	11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	NR6A1	Q15406	480 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PRTG	Q2VWP7	1150 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	VWA2	Q5GFL6	755 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PRAMEF13	Q5VWM6	474 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	ICE2	Q659A1	982 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	TTC23L	Q6PF05	361 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	CCDC137	Q6PK04	289 aa	Known RBP	11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728		Q6ZS92	163 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	LAPTM4B	Q86VI4	370 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	HPS6	Q86YV9	775 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PLD3	Q8IV08	490 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PARP9	Q8IXQ6	854 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	SLC35F6	Q8N357	371 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	CISD2	Q8N5K1	135 aa	Known RBP	11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	MCU	Q8NE86	351 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	STT3B	Q8TCJ2	826 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	SIGLEC10	Q96LC7	697 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	FOPNL	Q96NB1	174 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	GPR21	Q99679	349 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZFYVE21	Q9BQ24	234 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PLCD4	Q9BRC7	762 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PLAC1	Q9HBJ0	212 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	ATP13A2	Q9NQ11	1180 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	HOMER3	Q9NSC5	361 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	INTS10	Q9NVR2	710 aa	Known RBP	11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	MAP10	Q9P2G4	905 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	G3BP2	Q9UN86	482 aa	Known RBP	11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	PCDHGA10	Q9Y5H3	936 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	FAM169A	Q9Y6X4	670 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	FBN2	P35556	2912 aa		11.1	□□□□□ -0.63
VTI1A-208	ENST00000494728	IGLV3-12	A0A075B6K2	115 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	CTAGE9	A4FU28	777 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728		E7ENX8	843 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728		H3BMM5	538 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	HAT1	O14929	419 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	SRPX2	O60687	465 aa	Predicted RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	PHF2	O75151	1096 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	CELA2A	P08217	269 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZGLP1	P0C6A0	271 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	MLN	P12872	115 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	IMPA1	P29218	277 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	CMPK1	P30085	196 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	PGGT1B	P53609	377 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	PNLIPRP1	P54315	467 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	TAP2	Q03519	686 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	AIMP2	Q13155	320 aa	Known RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	SYT16	Q17RD7	645 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	TUBB8	Q3ZCM7	444 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	MSS51	Q4VC12	460 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	CYHR1	Q6ZMK1	362 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	MBOAT1	Q6ZNC8	495 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	CPNE9	Q8IYJ1	553 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	IQCK	Q8N0W5	287 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	RAB42	Q8N4Z0	105 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	AMER3	Q8N944	861 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	KCNJ9	Q92806	393 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	OR2A5	Q96R48	311 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	NDN	Q99608	321 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	BARD1	Q99728	777 aa	Known RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	CRB3	Q9BUF7	120 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	KCNF1	Q9H3M0	494 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	XAB2	Q9HCS7	855 aa	Known RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZNF304	Q9HCX3	659 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	MRPS30	Q9NP92	439 aa	Known RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	ABCF3	Q9NUQ8	709 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	SAMD15	Q9P1V8	674 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	ERRFI1	Q9UJM3	462 aa	Predicted RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	ADAMTS6	Q9UKP5	1117 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	NOVA2	Q9UNW9	492 aa	Known RBP	11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728	PCNX1	Q96RV3	2341 aa		11.09	□□□□□ -0.63
VTI1A-208	ENST00000494728		A1L4Q6	167 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	SDR42E2	A6NKP2	422 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	SMAP	O00193	183 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	PGRMC1	O00264	195 aa	Known RBP	11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	E2F3	O00716	465 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	FOXS1	O43638	330 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	KLHL18	O94889	574 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	HAUS5	O94927	633 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	CBX6	O95503	412 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	CAT	P04040	527 aa	Known RBP	11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	ALPP	P05187	535 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	CD63	P08962	238 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	COX6A1	P12074	109 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	PAM	P19021	973 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	FBL	P22087	321 aa	Known RBP	11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	GABRB3	P28472	473 aa		11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	RPA3	P35244	121 aa	Predicted RBP	11.08	□□□□□ -0.64
VTI1A-208	ENST00000494728	MAT1A	Q00266	395 aa	Known RBP	11.08	□□□□□ -0.64

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