RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TTLL2Q9BWV7 592 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 C1QTNF7Q9BXJ2 289 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 RNF39Q9H2S5 420 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 REEP1Q9H902 201 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF556Q9HAH1 456 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 OLA1Q9NTK5 396 aaKnown RBP11.37□□□□□ -0.59
HDAC4-210ENST00000493582 ERAP1Q9NZ08 941 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 UBQLN1Q9UMX0 589 aaKnown RBP11.37□□□□□ -0.59
HDAC4-210ENST00000493582 A0A075B6Q4 140 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 FAM220BPB1ANY3 271 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 WDR47O94967 919 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 ALPPP05187 535 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 GLULP15104 373 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 CDKN2CP42773 168 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 CDKN1CP49918 316 aaPredicted RBP11.37□□□□□ -0.59
HDAC4-210ENST00000493582 STC1P52823 247 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 FAM189BP81408 668 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 MXD1Q05195 221 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 VEPH1Q14D04 833 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 ATG9BQ674R7 924 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 BHLHA9Q7RTU4 235 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 ATCAYQ86WG3 371 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 TCTE3Q8IZS6 198 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 OR8H1Q8NGG4 311 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 C1QTNF3Q9BXJ4 246 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 AGO3Q9H9G7 860 aaKnown RBP11.37□□□□□ -0.59
HDAC4-210ENST00000493582 SP110Q9HB58 689 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 SAMD4AQ9UPU9 718 aaKnown RBP11.37□□□□□ -0.59
HDAC4-210ENST00000493582 DERAQ9Y315 318 aa11.37□□□□□ -0.59
HDAC4-210ENST00000493582 DICER1Q9UPY3 1922 aaKnown RBP11.37□□□□□ -0.59
HDAC4-210ENST00000493582 TRAV19A0A0A6YYK7 116 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CIB4A0PJX0 185 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 FADS2P1A8MWK0 482 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 A8MX80 341 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SCAMP3O14828 347 aaKnown RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 OR1I1O60431 355 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ENPP1P22413 925 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 FOXD4Q12950 439 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TNK1Q13470 666 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 DMC1Q14565 340 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TATDN3Q17R31 274 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TIGD7Q6NT04 549 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 DOK6Q6PKX4 331 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SUSD1Q6UWL2 747 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF767PQ75MW2 155 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ZSWIM9Q86XI8 627 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TMC8Q8IU68 726 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 NIM1KQ8IY84 436 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TOR1AIP2Q8NFQ8 470 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 UTP15Q8TED0 518 aaKnown RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 REPS1Q96D71 796 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PCED1BQ96HM7 432 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 C3orf14Q9HBI5 128 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 POPDC3Q9HBV1 291 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SARS2Q9NP81 518 aaKnown RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 MYOZ2Q9NPC6 264 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TMEM184CQ9NVA4 438 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 FNDC3AQ9Y2H6 1198 aaKnown RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TRBV5-3A0A0A0MS03 114 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 OR5K3A6NET4 321 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 OR7A17O14581 309 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 KLK8O60259 260 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TNFRSF21O75509 655 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PEX11BO96011 259 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CSF3P09919 207 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ATXN1LP0C7T5 689 aaKnown RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 IL1RNP18510 177 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SNTA1Q13424 505 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SSX1Q16384 188 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 NADSYN1Q6IA69 706 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 FAHD1Q6P587 224 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CREB3L2Q70SY1 520 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF605Q86T29 641 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SLC44A2Q8IWA5 706 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PEX13Q92968 403 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PPP1R2P1Q96PQ5 205 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CPPED1Q9BRF8 314 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.36□□□□□ -0.591e-6■■□□□ 14.2
HDAC4-210ENST00000493582 ABCG8Q9H221 673 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 DIABLOQ9NR28 239 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 TMLHEQ9NVH6 421 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 EVA1BQ9NVM1 165 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PHIPQ8WWQ0 1821 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SOCS7O14512 581 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PDPK1O15530 556 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 NIPSNAP2O75323 286 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CCNDBP1O95273 360 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 IL6P05231 212 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 HAPLN1P10915 354 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 KCNQ1P51787 676 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 OLR1P78380 273 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PTPRNQ16849 979 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 INO80DQ53TQ3 878 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-210ENST00000493582 SLC35F1Q5T1Q4 408 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 MARC1Q5VT66 337 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 FAM171BQ6P995 826 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ALKAL1Q6UXT8 129 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 CCDC149Q6ZUS6 474 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 ABI3BPQ7Z7G0 1075 aa11.36□□□□□ -0.59
HDAC4-210ENST00000493582 PLPP6Q8IY26 295 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms