RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 KCNC3Q14003 757 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TRIM29Q14134 588 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CLPPQ16740 277 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 KBTBD12Q3ZCT8 623 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 GAGE2EQ4V326 116 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TECRLQ5HYJ1 363 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 WDR38Q5JTN6 314 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 RARS2Q5T160 578 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 C20orf194Q5TEA3 1177 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 SNX30Q5VWJ9 437 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ADALQ6DHV7 355 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 JADE1Q6IE81 842 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 LCN10Q6JVE6 187 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 GAGE2AQ6NT46 116 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ARHGAP11AQ6P4F7 1023 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PLXDC2Q6UX71 529 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CHST9Q7L1S5 443 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TSPAN33Q86UF1 283 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CTAGE4Q8IX94 777 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 LMNTD2Q8IXW0 634 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 SCYL3Q8IZE3 742 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CHCHD4Q8N4Q1 142 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 IQUBQ8NA54 791 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 HJURPQ8NCD3 748 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 RBM15BQ8NDT2 890 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 KLHDC9Q8NEP7 349 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MIPOL1Q8TD10 442 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 HCAR2Q8TDS4 363 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF473Q8WTR7 871 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CTNNBL1Q8WYA6 563 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 SEMA4DQ92854 862 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 EXOC4Q96A65 974 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM143Q96AN5 459 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ERP27Q96DN0 273 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MTERF3Q96E29 417 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 NSL1Q96IY1 281 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 OR2A14Q96R47 310 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 RUFY1Q96T51 708 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PSD2Q9BQI7 771 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 JPH2Q9BR39 696 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 RBM4Q9BWF3 364 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 OSBPL10Q9BXB5 764 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CAPS2Q9BXY5 557 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TRIM4Q9C037 500 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ALDH8A1Q9H2A2 487 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC68Q9H2F9 335 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MTIF3Q9H2K0 278 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TNMDQ9H2S6 317 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MFSD1Q9H3U5 465 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ZSCAN16Q9H4T2 348 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 CHMP1AQ9HD42 196 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 OLFML3Q9NRN5 406 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PDRG1Q9NUG6 133 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 SEPT11Q9NVA2 429 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 COMMD8Q9NX08 183 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MIOSQ9NXC5 875 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 C6orf203Q9P0P8 240 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 ZMAT5Q9UDW3 170 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 GAGE2DQ9UEU5 116 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TBK1Q9UHD2 729 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM184BQ9Y519 407 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 IKBKGQ9Y6K9 419 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 TAF1P21675 1872 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 PLXNA1Q9UIW2 1896 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 LTBP2Q14767 1821 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 COL4A4P53420 1690 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-208ENST00000490788 MYO18BQ8IUG5 2567 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 DNAH12Q6ZR08 3092 aa2.02□□□□□ -2.09
HMGB1-208ENST00000490788 XIRP2A4UGR9 3374 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 SNED1Q8TER0 1413 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ITIH6Q6UXX5 1313 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 DNAH14Q0VDD8 3507 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 A0A087WUV0 522 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 A0A1B0GUA9 196 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM110-MUSTN1A8MSY1 372 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 A8MZ25 164 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 B4DLN1 442 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 HHLA1C9JL84 531 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ANKRD65E5RJM6 399 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 GOLGA6L19H0YKK7 550 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 KIF2AO00139 706 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PDHXO00330 501 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PLK4O00444 970 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PLOD2O00469 737 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 LSM1O15116 133 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 NDUFS4O43181 175 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ECE2O60344 883 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 SYNCRIPO60506 623 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ZG16O60844 167 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 ERLIN1O75477 346 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 BAIAP3O94812 1187 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 LUC7L3O95232 432 aaKnown RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PDGFBP01127 241 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 APOHP02749 345 aaPredicted RBP2.01□□□□□ -2.09
HMGB1-208ENST00000490788 AMBPP02760 352 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 IVLP07476 585 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 PLA2G4BP0C869 781 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 VPREB1P12018 145 aa2.01□□□□□ -2.09
HMGB1-208ENST00000490788 FGF5P12034 268 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms