RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 KLHL8Q9P2G9 620 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P38-201ENST00000490557 CACNG5Q9UF02 275 aa4.31□□□□□ -1.72
HMGB1P38-201ENST00000490557 PYGO1Q9Y3Y4 419 aa4.31□□□□□ -1.72
HMGB1P38-201ENST00000490557 TRAV24A0A0B4J272 114 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 O00370 1275 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 NXPH2O95156 264 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 ACAT1P24752 427 aaKnown RBP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 PTAFRP25105 342 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 CLK1P49759 484 aaKnown RBP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 ZNF41P51814 821 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 UBASH3AP57075 661 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 DLK1P80370 383 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 NONOQ15233 471 aaKnown RBP eCLIP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 CTR9Q6PD62 1173 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 HSCBQ8IWL3 235 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 CCAR2Q8N163 923 aaKnown RBP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 OR10G8Q8NGN5 311 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 OR10Q1Q8NGQ4 319 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 METTL21AQ8WXB1 218 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 TSACCQ96A04 125 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 FER1L6-AS2Q96M78 137 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 TSPAN18Q96SJ8 248 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 NKX3-1Q99801 234 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 CCDC3Q9BQI4 270 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 FERMT1Q9BQL6 677 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 DGCR6LQ9BY27 220 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 SHARPINQ9H0F6 387 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 ATP13A3Q9H7F0 1226 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 Q9H8V8 135 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 MRGBPQ9NV56 204 aa4.3□□□□□ -1.72
HMGB1P38-201ENST00000490557 ARHGEF37A1IGU5 675 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 CASTOR2A6NHX0 329 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 H7C0S8 307 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 ZNF195O14628 629 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 ARHGEF9O43307 516 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 TBCAO75347 108 aaKnown RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 ZNF821O75541 412 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 GSRP00390 522 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 CGAP01215 116 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 SERPINB2P05120 415 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 FAM200BP0CF97 657 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 SLC2A2P11168 524 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 GLULP15104 373 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 PSMA3P25788 255 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 CDC25CP30307 473 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 CETN2P41208 172 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 DNA2P51530 1060 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 PAX9P55771 341 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 E2F5Q15329 346 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 XKR6Q5GH73 641 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 LRRC73Q5JTD7 316 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 WLSQ5T9L3 541 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 BSPRYQ5W0U4 402 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 UGT3A1Q6NUS8 523 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 FIP1L1Q6UN15 594 aaKnown RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 PTAR1Q7Z6K3 402 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 ANKRD13CQ8N6S4 541 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 KLHDC1Q8N7A1 406 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 SLC37A3Q8NCC5 494 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 OR7A2PQ8NGA2 310 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 OR6S1Q8NH40 331 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 SETD6Q8TBK2 473 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 AFAP1L1Q8TED9 768 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 SMAP2Q8WU79 429 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 PGM2Q96G03 612 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 C4orf45Q96LM5 186 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 OPRPNQ99935 248 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 TRIM51Q9BSJ1 452 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 FAM129AQ9BZQ8 928 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 NYXQ9GZU5 481 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 FZD8Q9H461 694 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 RASAL2Q9UJF2 1139 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 SNX7Q9UNH6 387 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 PPP1R3CQ9UQK1 317 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 EXOGQ9Y2C4 368 aaKnown RBP4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 PPP2R2CQ9Y2T4 447 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 LIPGQ9Y5X9 500 aa4.29□□□□□ -1.72
HMGB1P38-201ENST00000490557 A0A1W2PPW3 197 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 MSGN1A6NI15 193 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 MAGEC1O60732 1142 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 TYMPP19971 482 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 GSDMDP57764 484 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 WASHC5Q12768 1159 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 OPCMLQ14982 345 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 HLA-BQ31612 363 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 MOXD1Q6UVY6 613 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 SPATA21Q7Z572 469 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 AMIGO1Q86WK6 493 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 CCDC63Q8NA47 563 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 VMP1Q96GC9 406 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 NECTIN4Q96NY8 510 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 MYCBPQ99417 103 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 LPAR4Q99677 370 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 MAP3K3Q99759 626 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 KATNB1Q9BVA0 655 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 DNAJC4Q9NNZ3 241 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 ZCCHC17Q9NP64 241 aaKnown RBP4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 ZDHHC18Q9NUE0 388 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 BARHL2Q9NY43 387 aa4.28□□□□□ -1.72
HMGB1P38-201ENST00000490557 SNX5Q9Y5X3 404 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms