RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 KBTBD12Q3ZCT8 623 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 NADK2Q4G0N4 442 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 BCL7AQ4VC05 210 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 FAM45BPQ6NSW5 357 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 TRMT10BQ6PF06 316 aaKnown RBP8.46□□□□□ -1.06
USP4-213ENST00000488520 MYO7BQ6PIF6 2116 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 PLXDC1Q8IUK5 500 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 TRIM48Q8IWZ4 208 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 GPATCH11Q8N954 259 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 TMEM102Q8N9M5 508 aaPredicted RBP8.46□□□□□ -1.06
USP4-213ENST00000488520 FAM45AQ8TCE6 357 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 SH3KBP1Q96B97 665 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 TSPAN17Q96FV3 270 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 LINC00615Q96LM1 132 aaPredicted RBP8.46□□□□□ -1.06
USP4-213ENST00000488520 FOPNLQ96NB1 174 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 RUFY1Q96T51 708 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.46□□□□□ -1.06
USP4-213ENST00000488520 OGFRQ9NZT2 677 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 LUZP4Q9P127 313 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 CPNE7Q9UBL6 633 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 LNPEPQ9UIQ6 1025 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 TRMT6Q9UJA5 497 aaKnown RBP8.46□□□□□ -1.06
USP4-213ENST00000488520 VWA7Q9Y334 891 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 COLEC10Q9Y6Z7 277 aa8.46□□□□□ -1.06
USP4-213ENST00000488520 MN1Q10571 1320 aaPredicted RBP8.46□□□□□ -1.06
USP4-213ENST00000488520 A6NCN8 305 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 FAM159BA6NKW6 160 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 RIPK2O43353 540 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 NDUFB5O43674 189 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 KIF1CO43896 1103 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 KDM1AO60341 852 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 KRT38O76015 456 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 ABHD2P08910 425 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 SLC35G4P0C7Q5 338 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CNTFP26441 200 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 ARNTP27540 789 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 ECHS1P30084 290 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 PRLHRP49683 370 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 RGS4P49798 205 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CLCNKAP51800 687 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CTSCP53634 463 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 RPS18P62269 152 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 MPP1Q00013 466 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 HSPA14Q0VDF9 509 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 RPA4Q13156 261 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 DNASE1L3Q13609 305 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 BOP1Q14137 746 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 USP10Q14694 798 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 KHDC1Q4VXA5 237 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 PRR30Q53SZ7 412 aaPredicted RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 PLEKHS1Q5SXH7 462 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 METRNLQ641Q3 311 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CPZQ66K79 652 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 FAM199XQ6PEV8 388 aaPredicted RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 CNSTQ6PJW8 725 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 FAM92BQ6ZTR7 304 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 RAPH1Q70E73 1250 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 GALNT7Q86SF2 657 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CNTN4Q8IWV2 1026 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 GSPT2Q8IYD1 628 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 AVL9Q8NBF6 648 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 MYRIPQ8NFW9 859 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 HM13Q8TCT9 377 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CT55Q8WUE5 264 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 LPGAT1Q92604 370 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 INPP5DQ92835 1189 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 CXorf40BQ96DE9 158 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 MEGF10Q96KG7 1140 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 AARSD1Q9BTE6 412 aaKnown RBP8.45□□□□□ -1.06
USP4-213ENST00000488520 P2RY12Q9H244 342 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 PPCSQ9HAB8 311 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 SYTL2Q9HCH5 934 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 KCND3Q9UK17 655 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 RAB21Q9UL25 225 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 PADI1Q9ULC6 663 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 HEBP2Q9Y5Z4 205 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 PRSS21Q9Y6M0 314 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 PCSK5Q92824 1860 aa8.45□□□□□ -1.06
USP4-213ENST00000488520 PCM1Q15154 2024 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 KIR2DS5A0A0G2JLQ3 304 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 A0A0G2JNG1 304 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 IQANK1A0A1B0GTG1 560 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 TLDC2A0PJX2 215 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 IQCF5A8MTL0 148 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 KIR2DS3K7RE56 304 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 UBXN7O94888 489 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 TIAF1O95411 115 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 VIPP01282 170 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 C9P02748 559 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 RPN2P04844 631 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 ANKRD34CP0C6C1 535 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 MYBL2P10244 700 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 STMN1P16949 149 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 RPL10P27635 214 aaKnown RBP8.44□□□□□ -1.06
USP4-213ENST00000488520 CA5AP35218 305 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 CCL11P51671 97 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 PGDP52209 483 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 POU4F1Q01851 419 aa8.44□□□□□ -1.06
USP4-213ENST00000488520 MRPL49Q13405 166 aaKnown RBP8.44□□□□□ -1.06
USP4-213ENST00000488520 KIR2DS5Q14953 304 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms