RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 CFAP206Q8IYR0 622 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 MICU2Q8IYU8 434 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 TMEM132CQ8N3T6 1108 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 RNF175Q8N4F7 328 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 PLA2G15Q8NCC3 412 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 OR2T12Q8NG77 320 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 OR7G3Q8NG95 312 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 CLHC1Q8NHS4 586 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 SETD7Q8WTS6 366 aaKnown RBP9.49□□□□□ -0.89
USP39-214ENST00000474572 NELL1Q92832 810 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 PPWD1Q96BP3 646 aaKnown RBP9.49□□□□□ -0.89
USP39-214ENST00000474572 APOLD1Q96LR9 279 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 EFCAB11Q9BUY7 163 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 SLC6A13Q9NSD5 602 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 FAM120CQ9NX05 1096 aaKnown RBP9.49□□□□□ -0.89
USP39-214ENST00000474572 FAM8A1Q9UBU6 413 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.49□□□□□ -0.89
USP39-214ENST00000474572 PCDHB14Q9Y5E9 798 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 PCYT1BQ9Y5K3 369 aaPredicted RBP9.49□□□□□ -0.89
USP39-214ENST00000474572 KCNE2Q9Y6J6 123 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 PCM1Q15154 2024 aa9.49□□□□□ -0.89
USP39-214ENST00000474572 KLHL33A6NCF5 533 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 SAC3D1A6NKF1 404 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 MAGEB17A8MXT2 336 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 GPR89AB7ZAQ6 455 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 UPK1AO00322 258 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 LINC01565O15544 149 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 ETHE1O95571 254 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 ADH1BP00325 375 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 LDLRP01130 860 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 FAM58BPP0C7Q3 252 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 GPR89BP0CG08 455 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 C1GALT1C1LP0DN25 315 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 RAP2AP10114 183 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 NPPBP16860 134 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 C5AR1P21730 350 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 CDKN2CP42773 168 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 ASMTP46597 345 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 CDK3Q00526 305 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 TAP2Q03519 686 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 DMPKQ09013 629 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 NFE2L1Q14494 772 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 RAB30Q15771 203 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 NRF1Q16656 503 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 WSCD2Q2TBF2 565 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 SPIN4Q56A73 249 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 PPP2R2DQ66LE6 453 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 LCTLQ6UWM7 567 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 FAM83HQ6ZRV2 1179 aaPredicted RBP9.48□□□□□ -0.89
USP39-214ENST00000474572 HEATR4Q86WZ0 1026 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 SYT12Q8IV01 421 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 YAF2Q8IY57 180 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 PGBD3Q8N328 593 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 OR10A6Q8NH74 314 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP39-214ENST00000474572 TFAP2CQ92754 450 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 NEIL2Q969S2 332 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 REPS1Q96D71 796 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 CXorf40BQ96DE9 158 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 MED8Q96G25 268 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 REXO5Q96IC2 774 aaKnown RBP9.48□□□□□ -0.89
USP39-214ENST00000474572 EGLN2Q96KS0 407 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 GBP5Q96PP8 586 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 PHF12Q96QT6 1004 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 INPP5KQ9BT40 448 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 CHID1Q9BWS9 393 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 TEX101Q9BY14 249 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 REXO4Q9GZR2 422 aaKnown RBP9.48□□□□□ -0.89
USP39-214ENST00000474572 S1PR5Q9H228 398 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 MAGIXQ9H6Y5 334 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 SGK2Q9HBY8 427 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 GEMIN8Q9NWZ8 242 aaKnown RBP9.48□□□□□ -0.89
USP39-214ENST00000474572 PCDHGB4Q9UN71 923 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 DYRK1BQ9Y463 629 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 PCDHGB5Q9Y5G0 923 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 CROCCQ5TZA2 2017 aa9.48□□□□□ -0.89
USP39-214ENST00000474572 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.47□□□□□ -0.89
USP39-214ENST00000474572 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.47□□□□□ -0.89
USP39-214ENST00000474572 PRR19A6NJB7 356 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 CXCR6O00574 342 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 SCAMP2O15127 329 aaKnown RBP9.47□□□□□ -0.89
USP39-214ENST00000474572 MID1O15344 667 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 CLOCKO15516 846 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 MAP3K13O43283 966 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 PI15O43692 258 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 PABPC4LP0CB38 370 aaKnown RBP9.47□□□□□ -0.89
USP39-214ENST00000474572 LAMP2P13473 410 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 KELP23276 732 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 TIA1P31483 386 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP39-214ENST00000474572 TRIM23P36406 574 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 TNFRSF4P43489 277 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 KIR2DL1P43626 348 aaPredicted RBP9.47□□□□□ -0.89
USP39-214ENST00000474572 KIR3DL1P43629 444 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 ACSM2AQ08AH3 577 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 LAPTM5Q13571 262 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 GK3PQ14409 553 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 ARHGAP19Q14CB8 494 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 DUOXA1Q1HG43 343 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 ITPRIPL2Q3MIP1 535 aa9.47□□□□□ -0.89
USP39-214ENST00000474572 SLC36A3Q495N2 470 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms