RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 NOVA2Q9UNW9 492 aaKnown RBP23.34■■□□□ 1.33
PTCH1-210ENST00000468211 POLEQ07864 2286 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 E5RI56 91 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 GOLGA8MH3BSY2 632 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 CTBP1Q13363 440 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 CUL1Q13616 776 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 DHX34Q14147 1143 aaKnown RBP23.33■■□□□ 1.33
PTCH1-210ENST00000468211 AGAP7PQ5VUJ5 663 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 ZNF470Q6ECI4 717 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 PRMT9Q6P2P2 845 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 REXO1L1PQ8IX06 675 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 THOC3Q96J01 351 aaKnown RBP23.33■■□□□ 1.33
PTCH1-210ENST00000468211 MS4A14Q96JA4 679 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 AGAP4Q96P64 663 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 LHPPQ9H008 270 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 MRPS30Q9NP92 439 aaKnown RBP23.33■■□□□ 1.33
PTCH1-210ENST00000468211 FBXO6Q9NRD1 293 aaPredicted RBP23.33■■□□□ 1.33
PTCH1-210ENST00000468211 TAC3Q9UHF0 121 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 RUVBL1Q9Y265 456 aaKnown RBP23.33■■□□□ 1.33
PTCH1-210ENST00000468211 SVILO95425 2214 aa23.33■■□□□ 1.33
PTCH1-210ENST00000468211 ZGRF1Q86YA3 2104 aa23.33■■□□□ 1.32
PTCH1-210ENST00000468211 ZCWPW2A0A1B0GU75 182 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 FAM237BA0A1B0GVD1 139 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 ANKUB1A6NFN9 424 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 PFDN6O15212 129 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 USP1O94782 785 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 PAMP19021 973 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 RPA3P35244 121 aaPredicted RBP23.32■■□□□ 1.32
PTCH1-210ENST00000468211 PNLIPRP1P54315 467 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 MUM1Q2TAK8 710 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 HKDC1Q2TB90 917 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 ZNF425Q6IV72 752 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 PPP4R1Q8TF05 950 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 ZNF480Q8WV37 535 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 MIEF2Q96C03 454 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 CABS1Q96KC9 395 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 INTS10Q9NVR2 710 aaKnown RBP23.32■■□□□ 1.32
PTCH1-210ENST00000468211 ZNF282Q9UDV7 671 aaPredicted RBP23.32■■□□□ 1.32
PTCH1-210ENST00000468211 C3orf18Q9UK00 162 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 NEU2Q9Y3R4 380 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 CENPEQ02224 2701 aa23.32■■□□□ 1.32
PTCH1-210ENST00000468211 NOTCH2Q04721 2471 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 IGLV3-12A0A075B6K2 115 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 WIPF3A6NGB9 483 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 KLHL18O94889 574 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 SLC16A8O95907 504 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 LDLRP01130 860 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 ERVK-10P10266 1014 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 FBLP22087 321 aaKnown RBP23.31■■□□□ 1.32
PTCH1-210ENST00000468211 SNRPNP63162 240 aaKnown RBP23.31■■□□□ 1.32
PTCH1-210ENST00000468211 SARNPP82979 210 aaKnown RBP23.31■■□□□ 1.32
PTCH1-210ENST00000468211 OCA2Q04671 838 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 ARHGAP19Q14CB8 494 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 ICE2Q659A1 982 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 ATG9BQ674R7 924 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 AMER2Q8N7J2 671 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 DNAJB14Q8TBM8 379 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 ZNF160Q9HCG1 818 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 FAM114A2Q9NRY5 505 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 SAMD15Q9P1V8 674 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 PPP2R2CQ9Y2T4 447 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 CACNA1DQ01668 2161 aa23.31■■□□□ 1.32
PTCH1-210ENST00000468211 CTAGE9A4FU28 777 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 SDR42E2A6NKP2 422 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 E7ENX8 843 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 DDAH2O95865 285 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 CATP04040 527 aaKnown RBP23.3■■□□□ 1.32
PTCH1-210ENST00000468211 CARSP49589 748 aaKnown RBP23.3■■□□□ 1.32
PTCH1-210ENST00000468211 TAP2Q03519 686 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 PRDX1Q06830 199 aaKnown RBP23.3■■□□□ 1.32
PTCH1-210ENST00000468211 ARMC3Q5W041 872 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 CYHR1Q6ZMK1 362 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 LINC00696Q6ZRV3 163 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 NEK10Q6ZWH5 1172 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 LRRC56Q8IYG6 542 aaPredicted RBP23.3■■□□□ 1.32
PTCH1-210ENST00000468211 RASGEF1CQ8N431 466 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 ARHGEF39Q8N4T4 335 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 CSNK1A1LQ8N752 337 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 ASB11Q8WXH4 323 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 MAGOHBQ96A72 148 aaKnown RBP23.3■■□□□ 1.32
PTCH1-210ENST00000468211 SERPINB12Q96P63 405 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 OR2A5Q96R48 311 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 ABCF3Q9NUQ8 709 aa23.3■■□□□ 1.32
PTCH1-210ENST00000468211 KIF5CO60282 957 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 CLDN1O95832 211 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 HPP00738 406 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 MLNP12872 115 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 ACPPP15309 386 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 COL8A1P27658 744 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 SLC1A2P43004 574 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 EMP3P54852 163 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 NAA25Q14CX7 972 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 IRAK1BP1Q5VVH5 260 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 KCNMB4Q86W47 210 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 PLD3Q8IV08 490 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 CPAMD8Q8IZJ3 1885 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 AMER3Q8N944 861 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 MCUQ8NE86 351 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 CATSPER1Q8NEC5 780 aa23.29■■□□□ 1.32
PTCH1-210ENST00000468211 CNDP1Q96KN2 507 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms