RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MAL2Q969L2 176 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 CCDC120Q96HB5 630 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 NARFLQ9H6Q4 476 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 ANKHQ9HCJ1 492 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 SPEF1Q9Y4P9 236 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 PCDHB5Q9Y5E4 795 aa11.38□□□□□ -0.59
CPSF3-202ENST00000460593 VPS26AO75436 327 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CDK1P06493 297 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CCNYL3P0C7X3 344 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CKMT1AP12532 417 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 PKMP14618 531 aaKnown RBP11.37□□□□□ -0.59
CPSF3-202ENST00000460593 KCNE1P15382 129 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 OR3A3P47888 321 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 GPR15P49685 360 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 GPAT3Q53EU6 434 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CALHM3Q86XJ0 350 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 OR4M1Q8NGD0 313 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 IPCEF1Q8WWN9 437 aaPredicted RBP11.37□□□□□ -0.59
CPSF3-202ENST00000460593 ASB15Q8WXK1 588 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 EGFL8Q99944 293 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CCM2Q9BSQ5 444 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 MAGIXQ9H6Y5 334 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 REEP1Q9H902 201 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 SMURF1Q9HCE7 757 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 TM9SF3Q9HD45 589 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 AASDHPPTQ9NRN7 309 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CRNNQ9UBG3 495 aaPredicted RBP11.37□□□□□ -0.59
CPSF3-202ENST00000460593 MKLN1Q9UL63 735 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 PPT2Q9UMR5 302 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 DNAJC25-GNG10A0A024R161 153 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 TRBV5-3A0A0A0MS03 114 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 TRAV19A0A0A6YYK7 116 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 PNMA8CA0A1B0GUJ8 204 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 FAM220BPB1ANY3 271 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 SCAMP3O14828 347 aaKnown RBP11.37□□□□□ -0.59
CPSF3-202ENST00000460593 KLK8O60259 260 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 SH3BGRLO75368 114 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 SLITRK5O94991 958 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 UBL4AP11441 157 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 IL7P13232 177 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 HOXC13P31276 330 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 RRM2P31350 389 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 HNF4AP41235 474 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 MAGEA2P43356 314 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 EFR3AQ14156 821 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 MSANTD2Q6P1R3 559 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 GLT6D1Q7Z4J2 308 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 CAMKK1Q8N5S9 505 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 BRSK1Q8TDC3 778 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 FEVQ99581 238 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 LRTM1Q9HBL6 345 aa11.37□□□□□ -0.59
CPSF3-202ENST00000460593 DICER1Q9UPY3 1922 aaKnown RBP11.37□□□□□ -0.59
CPSF3-202ENST00000460593 MN1Q10571 1320 aaPredicted RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 A0A0D9SEW6 157 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 LRRTM2O43300 516 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 CPSF4O95639 269 aaKnown RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 MC4RP32245 332 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 S100A3P33764 101 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 MLLT6P55198 1093 aaPredicted RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF235Q14590 738 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 TBCEQ15813 527 aaPredicted RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SLC39A12Q504Y0 691 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 NKAPQ8N5F7 415 aaKnown RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ANKK1Q8NFD2 765 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 GPR150Q8NGU9 434 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 OR10T2Q8NGX3 314 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 EBPLQ9BY08 206 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 UCK2Q9BZX2 261 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ABHD16BQ9H3Z7 469 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 CLMPQ9H6B4 373 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ACOXLQ9NUZ1 547 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 MS4A12Q9NXJ0 267 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 TEKT2Q9UIF3 430 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 LTBP3Q9NS15 1303 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 HMX3A6NHT5 357 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 CLCA1A8K7I4 914 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 TEX28O15482 410 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 TAPBPO15533 448 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 YES1P07947 543 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ACPPP15309 386 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SOX6P35712 828 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 OR1E2P47887 323 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ACVR1Q04771 509 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 VN1R5Q7Z5H4 357 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 YIPF7Q8N8F6 280 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 PPTC7Q8NI37 304 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 OMA1Q96E52 524 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 GABARAPL1Q9H0R8 117 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 C11orf54Q9H0W9 315 aaPredicted RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 POPDC3Q9HBV1 291 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 ZNF226Q9NYT6 803 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 CCDC59Q9P031 241 aaKnown RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 SPASTQ9UBP0 616 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 PCDHGC4Q9Y5F7 938 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 V9GYH0 126 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 LOC730098B7Z3J9 87 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 TMCC2O75069 709 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 OGNP20774 298 aaKnown RBP11.36□□□□□ -0.59
CPSF3-202ENST00000460593 GNPDA1P46926 289 aa11.36□□□□□ -0.59
CPSF3-202ENST00000460593 RAB25P57735 213 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms