RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CSF1P09603 554 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 HNRNPA1P09651 372 aaKnown RBP eCLIP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 VSIG8P0DPA2 414 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 NQO1P15559 274 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 PTNP21246 168 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 WARSP23381 471 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 DDX6P26196 483 aaKnown RBP eCLIP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 APOBEC3AP31941 199 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CRHR1P34998 444 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 GPX4P36969 197 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CRATP43155 626 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ALDH3B1P43353 468 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 SOX8P57073 446 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF45Q02386 682 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CD69Q07108 199 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 RESTQ13127 1097 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC13A2Q13183 592 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 TSTA3Q13630 321 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 STXBP2Q15833 593 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 BMT2Q1RMZ1 405 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ACER2Q5QJU3 275 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 PIP5KL1Q5T9C9 394 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ANKS6Q68DC2 871 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CLEC6AQ6EIG7 209 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 RNF44Q7L0R7 432 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC26A9Q7LBE3 791 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 SNX20Q7Z614 316 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 LHFPL4Q7Z7J7 247 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 PLCZ1Q86YW0 608 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 MISPQ8IVT2 679 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CLYBLQ8N0X4 340 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 TDRD5Q8NAT2 981 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 C19orf18Q8NEA5 215 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CATSPER1Q8NEC5 780 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 OR2L3Q8NG85 312 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CPNE4Q96A23 557 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 REPS1Q96D71 796 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ELP4Q96EB1 424 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 PGAP3Q96FM1 320 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF486Q96H40 463 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 BOD1Q96IK1 185 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 TPD52L3Q96J77 140 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF333Q96JL9 665 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF317Q96PQ6 595 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 INTS14Q96SY0 518 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 COPS4Q9BT78 406 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 MRIQ9BWK5 157 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 THAP2Q9H0W7 228 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 TP63Q9H3D4 680 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 PDZD7Q9H5P4 517 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 BCAS3Q9H6U6 928 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CATSPERBQ9H7T0 1116 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CAB39LQ9H9S4 337 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 IFT46Q9NQC8 304 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 TXLNGQ9NUQ3 528 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 GIMAP4Q9NUV9 329 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 APOBEC3BQ9UH17 382 aaKnown RBP4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 CLEC2DQ9UHP7 191 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 SCML1Q9UN30 329 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 STARD10Q9Y365 291 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 V9GYQ6 96 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 BRCA2P51587 3418 aa4.67□□□□□ -1.66
CCDC88A-209ENST00000456975 OR2AG2A6NM03 316 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 A8MV72 311 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NPIPB8E9PQR5 432 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CCDC188H7C350 402 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF263O14978 683 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 VILLO15195 856 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 INPPL1O15357 1258 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ADCY6O43306 1168 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MED6O75586 246 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 KRT36O76013 467 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CNTN5O94779 1100 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SERPINA3P01011 423 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 AMY1AP04745 511 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 RPLP2P05387 115 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SERPINA6P08185 405 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CTXN2P0C2S0 81 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SLURP2P0DP57 97 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NR2C1P13056 603 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 FAHP16930 419 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 ZNF8P17098 575 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 YWHAQP27348 245 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 GIFP27352 417 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CRABP1P29762 137 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CDK7P50613 346 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PGDP52209 483 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 NDST2P52849 883 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PLK1P53350 603 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PNLIPRP1P54315 467 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 UBE2G2P60604 165 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 PRPS1P60891 318 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TGM3Q08188 693 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CTBP1Q13363 440 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 MRPL49Q13405 166 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 CBFBQ13951 182 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 SMCO1Q147U7 214 aa4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 KARSQ15046 597 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-209ENST00000456975 TBCCQ15814 346 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms