RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 BSNQ9UPA5 3926 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 IGKV1-8A0A0C4DH67 115 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 IGHEP01854 428 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 C8GP07360 202 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 IMPA1P29218 277 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 CDKN2DP55273 166 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 ABATP80404 500 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 COLEC12Q5KU26 742 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 STEAP4Q687X5 459 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 ZNF425Q6IV72 752 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 PAQR3Q6TCH7 311 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 COX15Q7KZN9 410 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 PAQR7Q86WK9 346 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 LRRC56Q8IYG6 542 aaPredicted RBP20.28■□□□□ 0.84
HMGB3-205ENST00000455596 FDCSPQ8NFU4 85 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.28■□□□□ 0.84
HMGB3-205ENST00000455596 WDR83Q9BRX9 315 aaKnown RBP20.28■□□□□ 0.84
HMGB3-205ENST00000455596 SLC26A1Q9H2B4 701 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 SLC17A6Q9P2U8 582 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 CORO1CQ9ULV4 474 aaPredicted RBP20.28■□□□□ 0.84
HMGB3-205ENST00000455596 ZNF451Q9Y4E5 1061 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 PCDHGB7Q9Y5F8 929 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 SPTA1P02549 2419 aa20.28■□□□□ 0.84
HMGB3-205ENST00000455596 A6NL46 340 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 H0YGG7 62 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 UMODP07911 640 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 EZRP15311 586 aaKnown RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 RPL21P46778 160 aaKnown RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 OR1D4P47884 311 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 FOXL2P58012 376 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 ARF3P61204 181 aaPredicted RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 PDIA2Q13087 525 aaKnown RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 SP140Q13342 867 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 PDAP1Q13442 181 aaKnown RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 MUM1Q2TAK8 710 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 PRMT9Q6P2P2 845 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 TRMT10BQ6PF06 316 aaKnown RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 ANKMY2Q8IV38 441 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 METTL27Q8N6F8 245 aaPredicted RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 GPATCH11Q8N954 259 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 BBOF1Q8ND07 529 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 CCDC138Q96M89 665 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 ZNF304Q9HCX3 659 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 CCDC177Q9NQR7 707 aaPredicted RBP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 ADAMTS6Q9UKP5 1117 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 PDE10AQ9Y233 779 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.27■□□□□ 0.84
HMGB3-205ENST00000455596 MAU2Q9Y6X3 613 aa20.27■□□□□ 0.84
HMGB3-205ENST00000455596 TP73O15350 636 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 SLC16A5O15375 505 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 EMP3P54852 163 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 RELAQ04206 551 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 FRG1Q14331 258 aaKnown RBP20.26■□□□□ 0.83
HMGB3-205ENST00000455596 NKG7Q16617 165 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 PRTGQ2VWP7 1150 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 HECTD2Q5U5R9 776 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 FAM45BPQ6NSW5 357 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 PPP1R32Q7Z5V6 425 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 ADCK2Q7Z695 626 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 CLEC1AQ8NC01 280 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 FBXO36Q8NEA4 188 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 FAM45AQ8TCE6 357 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 RERGQ96A58 199 aaPredicted RBP20.26■□□□□ 0.83
HMGB3-205ENST00000455596 NACC2Q96BF6 587 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 LINGO1Q96FE5 620 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 CABS1Q96KC9 395 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 NUDT9Q9BW91 350 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 PARVBQ9HBI1 364 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 P4HTMQ9NXG6 502 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 GPR83Q9NYM4 423 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 STOX2Q9P2F5 926 aaPredicted RBP20.26■□□□□ 0.83
HMGB3-205ENST00000455596 NXT1Q9UKK6 140 aaKnown RBP20.26■□□□□ 0.83
HMGB3-205ENST00000455596 SNX24Q9Y343 169 aa20.26■□□□□ 0.83
HMGB3-205ENST00000455596 MED26O95402 600 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 HIST1H2AGP0C0S8 130 aaPredicted RBP20.25■□□□□ 0.83
HMGB3-205ENST00000455596 HIST1H2ADP20671 130 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 IL2P60568 153 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 TBPL1P62380 186 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 DCAF10Q5QP82 559 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 PRAMEF13Q5VWM6 474 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 HPS6Q86YV9 775 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 TMEM151BQ8IW70 566 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 DTWD1Q8N5C7 304 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 CSNK1A1LQ8N752 337 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 COL26A1Q96A83 441 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 HIST1H2AHQ96KK5 128 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 C10orf90Q96M02 699 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 OR2A5Q96R48 311 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 SPSB2Q99619 263 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 HIST1H2AJQ99878 128 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 H2AFJQ9BTM1 129 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 CUEDC1Q9NWM3 386 aaPredicted RBP20.25■□□□□ 0.83
HMGB3-205ENST00000455596 ZFATQ9P243 1243 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 VWA7Q9Y334 891 aa20.25■□□□□ 0.83
HMGB3-205ENST00000455596 DOCK10Q96BY6 2186 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 PABPN1LA6NDY0 278 aaKnown RBP20.24■□□□□ 0.83
HMGB3-205ENST00000455596 FAM187AA6NFU0 413 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 E7ESA3 106 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 AGPSO00116 658 aa20.24■□□□□ 0.83
HMGB3-205ENST00000455596 TXNDC9O14530 226 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms