RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DENND2DQ9H6A0 471 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 TNS1Q9HBL0 1735 aaKnown RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 LRRC14BA6NHZ5 514 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 FAM170BA6NMN3 283 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 CXCR6O00574 342 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 TRIM24O15164 1050 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 WFS1O76024 890 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 HOXC13P31276 330 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 LIPJQ5W064 366 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 PIANPQ8IYJ0 282 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 COX18Q8N8Q8 333 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 GPR150Q8NGU9 434 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 RORBQ92753 470 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 FOXJ1Q92949 421 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 NDC1Q9BTX1 674 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 PBX4Q9BYU1 374 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 SOBPA7XYQ1 873 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 C2orf74A8MZ97 194 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 B4GALT3O60512 393 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 IFNW1P05000 195 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 THEGLP0DJG4 465 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 SERPINB1P30740 379 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF140P52738 457 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 TAS2R50P59544 299 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 EMX2Q04743 252 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 DLG1Q12959 904 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 SEMA3BQ13214 749 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 PHTF2Q8N3S3 785 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 POMGNT2Q8NAT1 580 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 LRRC58Q96CX6 371 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 SLC38A2Q96QD8 506 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 REXO4Q9GZR2 422 aaKnown RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 FBRSL1Q9HCM7 1045 aaKnown RBP7.19□□□□□ -1.26
SYNE1-213ENST00000448038 HS3ST2Q9Y278 367 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 FER1L6Q2WGJ9 1857 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 KIAA1217Q5T5P2 1943 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 MYL12BO14950 172 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 LATO43561 262 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 UBXN7O94888 489 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 FABP3P05413 133 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 C1GALT1C1LP0DN25 315 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 KHKP50053 298 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 TBPL1P62380 186 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 DUSP6Q16828 381 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 RFX4Q33E94 735 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 GALNT18Q6P9A2 607 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 RASGRP3Q8IV61 690 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 NATD1Q8N6N6 113 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 KCT2Q8NC54 265 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 ADCY4Q8NFM4 1077 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 BPIFB6Q8NFQ5 453 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 HHIPQ96QV1 700 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 LRRC3Q9BY71 257 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 TMEM27Q9HBJ8 222 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 SUSD2Q9UGT4 822 aa7.19□□□□□ -1.26
SYNE1-213ENST00000448038 IGLV3-10A0A075B6K4 115 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 MUSKO15146 869 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 HLA-DQA2P01906 255 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 APOA1P02647 267 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 GPIP06744 558 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 RPS3P23396 243 aaKnown RBP eCLIP7.18□□□□□ -1.26
SYNE1-213ENST00000448038 PBX2P40425 430 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 RABIFP47224 123 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 PXNP49023 591 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-213ENST00000448038 PGFP49763 221 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 DYNC1I2Q13409 638 aaKnown RBP7.18□□□□□ -1.26
SYNE1-213ENST00000448038 LPCAT4Q643R3 524 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 MACC1Q6ZN28 852 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 SYVN1Q86TM6 617 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 ISCA2Q86U28 154 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 EPHX4Q8IUS5 362 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 GPR151Q8TDV0 419 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 RASSF5Q8WWW0 418 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 BTBD9Q96Q07 612 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 SLC35A5Q9BS91 424 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 TREX1Q9NSU2 369 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 UTS2RQ9UKP6 389 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 GPR34Q9UPC5 381 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 POMPQ9Y244 141 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 OR6C74A6NCV1 312 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 CLIC1O00299 241 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 RGS5O15539 181 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 GSTM5P46439 218 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 DEPDC4Q8N2C3 294 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 PGBD5Q8N414 524 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 TEX47Q8TBZ9 253 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 ANKRD49Q8WVL7 239 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 DTD2Q96FN9 168 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 CGREF1Q99674 301 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 CIB1Q99828 191 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 CFHR5Q9BXR6 569 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 ZBTB26Q9HCK0 441 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 PNO1Q9NRX1 252 aaKnown RBP7.18□□□□□ -1.26
SYNE1-213ENST00000448038 CLN6Q9NWW5 311 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 PHF11Q9UIL8 331 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 A0A087WXM4 84 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 GMFGO60234 142 aa7.18□□□□□ -1.26
SYNE1-213ENST00000448038 CSTF2P33240 577 aaKnown RBP eCLIP7.18□□□□□ -1.26
SYNE1-213ENST00000448038 RPL34P49207 117 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms