RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 IL22Q9GZX6 179 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 LHPPQ9H008 270 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 SOX17Q9H6I2 414 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 ZNF552Q9H707 407 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 SLC6A20Q9NP91 592 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 FAM114A2Q9NRY5 505 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 UTP6Q9NYH9 597 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 BFARQ9NZS9 450 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 CTSFQ9UBX1 484 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 ZNF282Q9UDV7 671 aaPredicted RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 CDC14AQ9UNH5 594 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 REXO2Q9Y3B8 237 aaKnown RBP7.43□□□□□ -1.22
VPS50-204ENST00000438395 MED13Q9UHV7 2174 aa7.43□□□□□ -1.22
VPS50-204ENST00000438395 POLEQ07864 2286 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ELOA3CA0A087WX78 387 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 DYTNA2CJ06 578 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 HYKKA2RU49 373 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ELOA3DA6NLF2 546 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 ZNF839A8K0R7 811 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 IQCF5A8MTL0 148 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 TARM1B6A8C7 271 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 E5RI56 91 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 H3BMH7 237 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 H3BMM5 538 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 SRPX2O60687 465 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 PHF2O75151 1096 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 CNOT3O75175 753 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 ALOX12BO75342 701 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 GPC4O75487 556 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 SLCO2B1O94956 709 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 CCNDBP1O95273 360 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 CBX6O95503 412 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 LDLRP01130 860 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 CTSBP07858 339 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ANXA5P08758 320 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 TPBGLP0DKB5 382 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 MCM3P25205 808 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 AOAHP28039 575 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 RPA3P35244 121 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 TSFMP43897 325 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 BDKRB1P46663 353 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 OR1D4P47884 311 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 SOX8P57073 446 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 FOXL2P58012 376 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 AP2B1P63010 937 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ARG2P78540 354 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ACVR1Q04771 509 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 NAA30Q147X3 362 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 RPS6KA1Q15418 735 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 NKG7Q16617 165 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 HIF1AQ16665 826 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ELOA3BQ3SY89 546 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 WASHC2DQ5SRD0 308 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 B3GNTL1Q67FW5 361 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 FCRL6Q6DN72 434 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 PRMT9Q6P2P2 845 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ISLR2Q6UXK2 745 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 C4orf22Q6V702 233 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 Q6ZS92 163 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ZNF534Q76KX8 674 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 LDB1Q86U70 411 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 CUZD1Q86UP6 607 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 SLC13A5Q86YT5 568 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 VRK3Q8IV63 474 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 RNF10Q8N5U6 811 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 LMNTD1Q8N9Z9 388 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ELOA3Q8NG57 546 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 LKAAEAR1Q8TD35 194 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 C1orf54Q8WWF1 131 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 RERGQ96A58 199 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 ZUFSPQ96AP4 578 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 HES6Q96HZ4 224 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 THOC3Q96J01 351 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 CABS1Q96KC9 395 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ZNF778Q96MU6 729 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 MDFIQ99750 246 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 SLC26A1Q9H2B4 701 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 ZNF304Q9HCX3 659 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 EIF2B3Q9NR50 452 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 SPATA7Q9P0W8 599 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 MARCH4Q9P2E8 410 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 ERRFI1Q9UJM3 462 aaPredicted RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 C3orf18Q9UK00 162 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 NOVA2Q9UNW9 492 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 HS3ST3B1Q9Y662 390 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 CAPN6Q9Y6Q1 641 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 MAU2Q9Y6X3 613 aa7.42□□□□□ -1.22
VPS50-204ENST00000438395 TNRC6AQ8NDV7 1962 aaKnown RBP7.42□□□□□ -1.22
VPS50-204ENST00000438395 NSG1A0A0A6YYJ2 146 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 A0A0J9YVX5 310 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 MASP2O00187 686 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 C1orf105O95561 183 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 HPP00738 406 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 CATP04040 527 aaKnown RBP7.41□□□□□ -1.22
VPS50-204ENST00000438395 RNF224P0DH78 156 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 MYBL2P10244 700 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 PAMP19021 973 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 CHRM3P20309 590 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 FDXRP22570 491 aa7.41□□□□□ -1.22
VPS50-204ENST00000438395 PSMB5P28074 263 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms