RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 KRT6CP48668 564 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 FKBP3Q00688 224 aaKnown RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 CALD1Q05682 793 aaKnown RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 AIMP2Q13155 320 aaKnown RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 ITGA7Q13683 1181 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 PHKG1Q16816 387 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 SNX30Q5VWJ9 437 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 CEP57Q86XR8 500 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 ZC3H3Q8IXZ2 948 aaKnown RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 FAM89BQ8N5H3 189 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 THAP8Q8NA92 274 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 AGAP11Q8TF27 550 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 PIGBQ92521 554 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 SAT2Q96F10 170 aaPredicted RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 YTHDF1Q9BYJ9 559 aaKnown RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 ARHGEF38Q9NXL2 777 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 ARID2Q68CP9 1835 aa3.41□□□□□ -1.86
LINC01040-201ENST00000425048 CENPJQ9HC77 1338 aaPredicted RBP3.41□□□□□ -1.86
LINC01040-201ENST00000425048 TMEM129A0AVI4 362 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 MEIS2O14770 477 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 KRTAP5-8O75690 187 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 HMGB1P09429 215 aaKnown RBP3.4□□□□□ -1.87
LINC01040-201ENST00000425048 MGMTP16455 207 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 KHKP50053 298 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 PRELPP51888 382 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 RNASEH2BQ5TBB1 312 aaKnown RBP3.4□□□□□ -1.87
LINC01040-201ENST00000425048 ARHGAP22Q7Z5H3 698 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 CATSPER3Q86XQ3 398 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 OR52B6Q8NGF0 335 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 MMP27Q9H306 513 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 SMARCAD1Q9H4L7 1026 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 DPP3Q9NY33 737 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 STK26Q9P289 416 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.4□□□□□ -1.87
LINC01040-201ENST00000425048 TMED3Q9Y3Q3 217 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 FAM205AQ6ZU69 1335 aa3.4□□□□□ -1.87
LINC01040-201ENST00000425048 SCGB1D1O95968 90 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 ZNF19P17023 458 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 PNLIPRP2P54317 469 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 SETQ01105 290 aaPredicted RBP3.39□□□□□ -1.87
LINC01040-201ENST00000425048 TRIM29Q14134 588 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 ATAD3CQ5T2N8 411 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 AGAP7PQ5VUJ5 663 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 FCRLAQ7L513 359 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 MMD2Q8IY49 270 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 OR4D10Q8NGI6 311 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 MRAPQ8TCY5 172 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.39□□□□□ -1.87
LINC01040-201ENST00000425048 NAP1L5Q96NT1 182 aaPredicted RBP3.39□□□□□ -1.87
LINC01040-201ENST00000425048 MS4A10Q96PG2 267 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 OLFM1Q99784 485 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 CHMP4BQ9H444 224 aaKnown RBP3.39□□□□□ -1.87
LINC01040-201ENST00000425048 CHKBQ9Y259 395 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 SLC6A5Q9Y345 797 aa3.39□□□□□ -1.87
LINC01040-201ENST00000425048 TRBV5-5A0A0J9YX44 114 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 SURF4O15260 269 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 PAPSS1O43252 624 aaPredicted RBP3.38□□□□□ -1.87
LINC01040-201ENST00000425048 HAPLN1P10915 354 aaPredicted RBP3.38□□□□□ -1.87
LINC01040-201ENST00000425048 MYOGP15173 224 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 ATP4BP51164 291 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 ALDH3A2P51648 485 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 ERVK-16P61578 105 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 HAUS3Q68CZ6 603 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 TEX38Q6PEX7 206 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 IGFL3Q6UXB1 125 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 NDUFAF2Q8N183 169 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 C4orf32Q8N8J7 132 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 NAXEQ8NCW5 288 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 SFXN2Q96NB2 322 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 CDRT15Q96T59 188 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 CCDC3Q9BQI4 270 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 C9orf78Q9NZ63 289 aaPredicted RBP3.38□□□□□ -1.87
LINC01040-201ENST00000425048 ABCD2Q9UBJ2 740 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 NAALAD2Q9Y3Q0 740 aa3.38□□□□□ -1.87
LINC01040-201ENST00000425048 IGHV3-38A0A0C4DH36 116 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 FEZF1A0PJY2 475 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 IGHV2-70P01814 119 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 TM4SF1P30408 202 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 PPIAP62937 165 aaKnown RBP3.37□□□□□ -1.87
LINC01040-201ENST00000425048 RUNX3Q13761 415 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 SYN2Q92777 582 aaPredicted RBP3.37□□□□□ -1.87
LINC01040-201ENST00000425048 SLAMF9Q96A28 289 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 LCE3DQ9BYE3 92 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 ZMYND12Q9H0C1 365 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 OSGEPL1Q9H4B0 414 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 OPA3Q9H6K4 179 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 SEPT11Q9NVA2 429 aaKnown RBP3.37□□□□□ -1.87
LINC01040-201ENST00000425048 PSD3Q9NYI0 1048 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 AASSQ9UDR5 926 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 GTF2A1LQ9UNN4 478 aa3.37□□□□□ -1.87
LINC01040-201ENST00000425048 TRBV4-1A0A0J9YWV2 114 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 FAM168BA1KXE4 195 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 CDX4O14627 284 aaPredicted RBP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 GARSP41250 739 aaKnown RBP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 TRA2AQ13595 282 aaKnown RBP eCLIP3.36□□□□□ -1.87
LINC01040-201ENST00000425048 IRF3Q14653 427 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 Q1RN00 199 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 SPPL2AQ8TCT8 520 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 MORC4Q8TE76 937 aa3.36□□□□□ -1.87
LINC01040-201ENST00000425048 CHURC1Q8WUH1 139 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms