RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 GABRB1P18505 474 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 PRKACBP22694 351 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 MLLT3P42568 568 aaPredicted RBP10.39□□□□□ -0.75
USP54-204ENST00000422491 CYP4F2P78329 520 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 FCHO2Q0JRZ9 810 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 EFR3AQ14156 821 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 FAM214AQ32MH5 1076 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 CDONQ4KMG0 1287 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RAP1GAP2Q684P5 730 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 DOK6Q6PKX4 331 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 SBSNQ6UWP8 590 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 TRIM46Q7Z4K8 759 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 SERPINA11Q86U17 422 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 NATD1Q8N6N6 113 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 GALNT6Q8NCL4 622 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 OR4K2Q8NGD2 314 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 GPR151Q8TDV0 419 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RMDN1Q96DB5 314 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 MAP6Q96JE9 813 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 HSH2DQ96JZ2 352 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 CEP295NLQ96MC4 621 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 TRIB3Q96RU7 358 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 BEX2Q9BXY8 128 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 BARHL1Q9BZE3 327 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 POLR1EQ9GZS1 481 aaKnown RBP10.39□□□□□ -0.75
USP54-204ENST00000422491 LRTM1Q9HBL6 345 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ATP13A2Q9NQ11 1180 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 TAS2R16Q9NYV7 291 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RBPJLQ9UBG7 517 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ZNF490Q9ULM2 529 aaPredicted RBP10.39□□□□□ -0.75
USP54-204ENST00000422491 GABRQQ9UN88 632 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 KLHL20Q9Y2M5 609 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 SLC28A1O00337 649 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 POLR1CO15160 346 aaPredicted RBP10.39□□□□□ -0.75
USP54-204ENST00000422491 DPM1O60762 260 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 CPNE3O75131 537 aaKnown RBP10.39□□□□□ -0.75
USP54-204ENST00000422491 ALPPP05187 535 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ITGB1P05556 798 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 BCKDHAP12694 445 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 PBX3P40426 434 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 CDC42EP1Q00587 391 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ST3GAL4Q11206 333 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 TARDBPQ13148 414 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP54-204ENST00000422491 DOC2BQ14184 412 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ARHGEF6Q15052 776 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 EIF4HQ15056 248 aaKnown RBP10.39□□□□□ -0.75
USP54-204ENST00000422491 OR4F3Q6IEY1 312 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 PSAPL1Q6NUJ1 521 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ZNF367Q7RTV3 350 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 SCD5Q86SK9 330 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ADAMTSL2Q86TH1 951 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RNF130Q86XS8 419 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RGL4Q8IZJ4 473 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RDH10Q8IZV5 341 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 STX19Q8N4C7 294 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 KCNJ9Q92806 393 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 SNAPC3Q92966 411 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 CRELD1Q96HD1 420 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 OR5M11Q96RB7 305 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ZYG11BQ9C0D3 744 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 TMLHEQ9NVH6 421 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 ZNF226Q9NYT6 803 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 MOSPD1Q9UJG1 213 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 RPS6KA6Q9UK32 745 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 PCM1Q15154 2024 aa10.39□□□□□ -0.75
USP54-204ENST00000422491 SLC35F4A4IF30 521 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 C12orf71A8MTZ7 269 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 GPX5O75715 221 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ADRA2AP08913 450 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 PCSK1P29120 753 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 KDELR2P33947 212 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ADCYAP1R1P41586 468 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 CD83Q01151 205 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 IL10RBQ08334 325 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 FAPQ12884 760 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 TIMM50Q3ZCQ8 353 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 SLC39A12Q504Y0 691 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 FAM171BQ6P995 826 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 CBLL1Q75N03 491 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 EIF3MQ7L2H7 374 aaKnown RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 FAM124AQ86V42 546 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 APOBEC3FQ8IUX4 373 aaKnown RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 TCTE3Q8IZS6 198 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 PPP1R13LQ8WUF5 828 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 EPYCQ99645 322 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ZNF717Q9BY31 904 aaPredicted RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 KCNN3Q9UGI6 736 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 B4DXG7 233 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 HAS3O00219 553 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 TAPBPO15533 448 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ESR1P03372 595 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 DPEP1P16444 411 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 AZGP1P25311 298 aaKnown RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 PSMA3P25788 255 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 ERP29P30040 261 aaKnown RBP10.38□□□□□ -0.75
USP54-204ENST00000422491 S100A3P33764 101 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 HSPA7P48741 367 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 NKX3-2P78367 333 aa10.38□□□□□ -0.75
USP54-204ENST00000422491 TEKQ02763 1124 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms