RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ADI1Q9BV57 179 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 YTHDF1Q9BYJ9 559 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 CLMPQ9H6B4 373 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 RPF2Q9H7B2 306 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 GORASP2Q9H8Y8 452 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 POLMQ9NP87 494 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 TSR3Q9UJK0 312 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 ZNF490Q9ULM2 529 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 SNX6Q9UNH7 406 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 PLXNA2O75051 1894 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 TSPAN11A1L157 253 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 TRIM64CA6NLI5 447 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 PRRT4C9JH25 899 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 ACOX3O15254 700 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 DEAF1O75398 565 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 HIST1H2AGP0C0S8 130 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 PABPC1P11940 636 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 HIST1H2ADP20671 130 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 LHCGRP22888 699 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 P2RY2P41231 377 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 CTSOP43234 321 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 RECQLP46063 649 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 ALDH3B2P48448 385 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 RPIAP49247 311 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 DHPSP49366 369 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 STK19P49842 368 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 MERTKQ12866 999 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 BOP1Q14137 746 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 ARHGEF7Q14155 803 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 SLC36A3Q495N2 470 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 ATP13A5Q4VNC0 1218 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 FAM98BQ52LJ0 330 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 THEMIS2Q5TEJ8 643 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 B3GNT6Q6ZMB0 384 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 RBM44Q6ZP01 1051 aaKnown RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 UBE2R2Q712K3 238 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 RIMKLAQ8IXN7 391 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 PGBD3Q8N328 593 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 METTL25Q8N6Q8 603 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 HIST1H2AHQ96KK5 128 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 HIST1H2AJQ99878 128 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 H2AFJQ9BTM1 129 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 UGT2B28Q9BY64 529 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 GRIP2Q9C0E4 1043 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 ZDHHC6Q9H6R6 413 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 ACTR8Q9H981 624 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 OLAHQ9NV23 265 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 ARL15Q9NXU5 204 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 SLAMF8Q9P0V8 285 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 MBD1Q9UIS9 605 aaPredicted RBP14.38□□□□□ -0.11
USP4-203ENST00000415188 PCDHGB4Q9UN71 923 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 PDE10AQ9Y233 779 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 TMED5Q9Y3A6 229 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 PCDHGB5Q9Y5G0 923 aa14.38□□□□□ -0.11
USP4-203ENST00000415188 LAMA1P25391 3075 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 A0A087WXM4 84 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 DLGAP1O14490 977 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 ERN1O75460 977 aaKnown RBP14.37□□□□□ -0.11
USP4-203ENST00000415188 PRSS23O95084 383 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 SCELO95171 688 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 CISD3P0C7P0 127 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 RAP2AP10114 183 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 HOXB2P14652 356 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 ATP6V1B1P15313 513 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 CYP2A7P20853 494 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 VIPR1P32241 457 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 CCR7P32248 378 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 CAPGP40121 348 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 SLC6A12P48065 614 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 VASPP50552 380 aaPredicted RBP14.37□□□□□ -0.11
USP4-203ENST00000415188 LIMK1P53667 647 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 YBX1P67809 324 aaKnown RBP14.37□□□□□ -0.11
USP4-203ENST00000415188 B4GALNT1Q00973 533 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 MAPKAPK3Q16644 382 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 ATG9BQ674R7 924 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 GDPD4Q6W3E5 623 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 DPY19L3Q6ZPD9 716 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 ARMCX6Q7L4S7 300 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 C11orf74Q86VG3 221 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 RGL4Q8IZJ4 473 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 LIX1Q8N485 282 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 L3MBTL4Q8NA19 623 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 ASB11Q8WXH4 323 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 GTF2H4Q92759 462 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 RPL10LQ96L21 214 aaKnown RBP14.37□□□□□ -0.11
USP4-203ENST00000415188 PPM1MQ96MI6 270 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 CHID1Q9BWS9 393 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 SMPD3Q9NY59 655 aaPredicted RBP14.37□□□□□ -0.11
USP4-203ENST00000415188 B4GALT6Q9UBX8 382 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 OAZ3Q9UMX2 235 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 MAN2B2Q9Y2E5 1009 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 AK5Q9Y6K8 562 aa14.37□□□□□ -0.11
USP4-203ENST00000415188 THADAQ6YHU6 1953 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 KCNE1BA0A087WTH5 132 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 A0A1W2PQF6 199 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 TRIM64A6NGJ6 449 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 PATE3B3GLJ2 98 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 H0YAE9 185 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 FFAR3O14843 346 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms