RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 C16orf46Q6P387 395 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 TRMT10CQ7L0Y3 403 aaKnown RBP14.1□□□□□ -0.15
CHD1-202ENST00000414220 LRRC56Q8IYG6 542 aaPredicted RBP14.1□□□□□ -0.15
CHD1-202ENST00000414220 CT55Q8WUE5 264 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 RNF31Q96EP0 1072 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 WBP1Q96G27 269 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 DHRS4Q9BTZ2 278 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 CHST8Q9H2A9 424 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 L2HGDHQ9H9P8 463 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 CAB39LQ9H9S4 337 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 NMRAL1Q9HBL8 299 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 PCMTD2Q9NV79 361 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 ACOT9Q9Y305 439 aa14.1□□□□□ -0.15
CHD1-202ENST00000414220 SDK2Q58EX2 2172 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 A0A087X1B8 175 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 NPEPPSL1A6NEC2 478 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 H7BY64 318 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CDC7O00311 574 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 PHGDHO43175 533 aaKnown RBP14.09□□□□□ -0.15
CHD1-202ENST00000414220 CREG1O75629 220 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 KRT38O76015 456 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 C1QAP02745 245 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CNTFP26441 200 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 PTPN4P29074 926 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 RORAP35398 523 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 MSH2P43246 934 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 RPS15AP62244 130 aaKnown RBP14.09□□□□□ -0.15
CHD1-202ENST00000414220 MUM1Q2TAK8 710 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 WASHC2DQ5SRD0 308 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 TEX35Q5T0J7 233 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 MROH9Q5TGP6 573 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 PRAMEF17Q5VTA0 474 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 FAM199XQ6PEV8 388 aaPredicted RBP14.09□□□□□ -0.15
CHD1-202ENST00000414220 SBSNQ6UWP8 590 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 TMEM207Q6UWW9 146 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 TTLL10Q6ZVT0 673 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 RNF44Q7L0R7 432 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 SYVN1Q86TM6 617 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 PAQR7Q86WK9 346 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 EIF1ADQ8N9N8 165 aaKnown RBP14.09□□□□□ -0.15
CHD1-202ENST00000414220 OR56A3Q8NH54 315 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 THAP11Q96EK4 314 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 PRAP1Q96NZ9 151 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CCDC77Q9BR77 488 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CAPS2Q9BXY5 557 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 FUT8Q9BYC5 575 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CNOT10Q9H9A5 744 aaKnown RBP14.09□□□□□ -0.15
CHD1-202ENST00000414220 SLC6A20Q9NP91 592 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CUTCQ9NTM9 273 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 IFT80Q9P2H3 777 aaPredicted RBP14.09□□□□□ -0.15
CHD1-202ENST00000414220 IL17BQ9UHF5 180 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 CDC14AQ9UNH5 594 aa14.09□□□□□ -0.15
CHD1-202ENST00000414220 A0A1B0GX78 115 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 HYKKA2RU49 373 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 PRPF4O43172 522 aaKnown RBP eCLIP14.08□□□□□ -0.16
CHD1-202ENST00000414220 ZNF500O60304 480 aaPredicted RBP14.08□□□□□ -0.16
CHD1-202ENST00000414220 FAM155BO75949 473 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 SFTPCP11686 197 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 TYK2P29597 1187 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 ECHS1P30084 290 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 PGGT1BP53609 377 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 PMS2P54278 862 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 EMP3P54852 163 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 CDC20Q12834 499 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 CSHL1Q14406 222 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 TSNQ15631 228 aaKnown RBP14.08□□□□□ -0.16
CHD1-202ENST00000414220 ZKSCAN8Q15776 578 aaPredicted RBP14.08□□□□□ -0.16
CHD1-202ENST00000414220 NDUFA9Q16795 377 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 FAM83EQ2M2I3 478 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 CDKL4Q5MAI5 379 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 C1orf189Q5VU69 101 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 MLIPQ5VWP3 458 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 ZNF425Q6IV72 752 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 FBXO42Q6P3S6 717 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 KLC3Q6P597 504 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 BORAQ6PGQ7 559 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 ZNF517Q6ZMY9 492 aaPredicted RBP14.08□□□□□ -0.16
CHD1-202ENST00000414220 MBOAT1Q6ZNC8 495 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 GPSM1Q86YR5 675 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 SLC38A9Q8NBW4 561 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 STAG3L4Q8TBR4 150 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 ANKRD49Q8WVL7 239 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.08□□□□□ -0.16
CHD1-202ENST00000414220 TSNARE1Q96NA8 513 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 SGPP1Q9BX95 441 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 ENAMQ9NRM1 1142 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 RNF112Q9ULX5 631 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 KCNE2Q9Y6J6 123 aa14.08□□□□□ -0.16
CHD1-202ENST00000414220 CCDC189A1A4V9 331 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 SYCE1LA8MT33 242 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 POC1B-GALNT4F8VUJ3 575 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 H0YGG7 62 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 DSCR3O14972 297 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 NKX2-8O15522 239 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 CTSVO60911 334 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 H2AFYO75367 372 aaKnown RBP14.07□□□□□ -0.16
CHD1-202ENST00000414220 IPO13O94829 963 aaKnown RBP14.07□□□□□ -0.16
CHD1-202ENST00000414220 LTA4HP09960 611 aaKnown RBP14.07□□□□□ -0.16
CHD1-202ENST00000414220 PRKAR1AP10644 381 aa14.07□□□□□ -0.16
CHD1-202ENST00000414220 CD1DP15813 335 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms