RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 WDFY2Q96P53 400 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 XPO6Q96QU8 1125 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CDK5RAP1Q96SZ6 601 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 AGPAT1Q99943 283 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 SYT11Q9BT88 431 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MLPHQ9BV36 600 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MECRQ9BV79 373 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NDEL1Q9GZM8 345 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NSRP1Q9H0G5 558 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RBM38Q9H0Z9 239 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ISCUQ9H1K1 167 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DUSP15Q9H1R2 295 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 HAUS4Q9H6D7 363 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 PLGRKTQ9HBL7 147 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 POPDC2Q9HBU9 364 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MAGEE1Q9HCI5 957 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TM9SF3Q9HD45 589 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 PALMDQ9NP74 551 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 SPHK2Q9NRA0 654 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ABCC13Q9NSE7 274 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 GID8Q9NWU2 228 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NMRK1Q9NWW6 199 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 C2orf42Q9NWW7 574 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DDIT4Q9NX09 232 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ALKBH4Q9NXW9 302 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 KCMF1Q9P0J7 381 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DKK4Q9UBT3 224 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NKX1-2Q9UD57 310 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 LSM7Q9UK45 103 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 INTS6Q9UL03 887 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 AGO1Q9UL18 857 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RUVBL1Q9Y265 456 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RPH3AQ9Y2J0 694 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 KCNK7Q9Y2U2 307 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 IFT52Q9Y366 437 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ADAM18Q9Y3Q7 739 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TSC22D4Q9Y3Q8 395 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CLDN16Q9Y5I7 305 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 SAR1BQ9Y6B6 198 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF318Q5VUA4 2279 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DMDP11532 3685 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 MUC6Q6W4X9 2439 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 A0A0A6YYK5 440 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 A0A1W2PQJ5 194 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 A0A1W2PR48 441 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 TMEM82A0PJX8 343 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 FUOMA2VDF0 154 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 I6L893 689 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 M0QYT0 321 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 SLC9A3R1O14745 358 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 YKT6O15498 198 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 MFAP3LO75121 409 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 CNOT3O75175 753 aaKnown RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 KLHL2O95198 593 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 IGLV3-25P01717 112 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 IGLV3-27P01718 113 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 ALPPP05187 535 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 PRR35P0CG20 571 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 ALPPL2P10696 532 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 PRG2P13727 222 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 ERCC2P18074 760 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 POLR2CP19387 275 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 FPR1P21462 350 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 MMP8P22894 467 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 SLC6A4P31645 630 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 CETN2P41208 172 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 GABRB2P47870 512 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 KRT6CP48668 564 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 BCAP31P51572 246 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 OLR1P78380 273 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 COG7P83436 770 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 RUNX1T1Q06455 604 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 CD69Q07108 199 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 DBPQ10586 325 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 NME3Q13232 169 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 FZD5Q13467 585 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 TRA2AQ13595 282 aaKnown RBP eCLIP4.45□□□□□ -1.71e-8■□□□□ 10.4
SF3B1-202ENST00000409915 PHKG1Q16816 387 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 CDO1Q16878 200 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 HYAL4Q2M3T9 481 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 SLC9B1Q4ZJI4 515 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 COLEC12Q5KU26 742 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 ARTNQ5T4W7 220 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 NADSYN1Q6IA69 706 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 NIPAL1Q6NVV3 410 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 CDC73Q6P1J9 531 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 TSSK4Q6SA08 328 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 TRIM72Q6ZMU5 477 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 RNF111Q6ZNA4 994 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 ATG14Q6ZNE5 492 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 HTR3DQ70Z44 454 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 ERN2Q76MJ5 926 aaKnown RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 MON1BQ7L1V2 547 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 TAOK1Q7L7X3 1001 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 SLC26A9Q7LBE3 791 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 BMP8AQ7Z5Y6 402 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 LONP2Q86WA8 852 aa4.45□□□□□ -1.7
SF3B1-202ENST00000409915 RALGPS2Q86X27 583 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 MMAAQ8IVH4 418 aaKnown RBP4.45□□□□□ -1.7
SF3B1-202ENST00000409915 MAML2Q8IZL2 1156 aaPredicted RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms