RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 MED16Q9Y2X0 877 aa13.9□□□□□ -0.18
NIF3L1-205ENST00000409588 A0A0J9YVX5 310 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 VSTM2BA6NLU5 285 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 TTLL8A6PVC2 850 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 CTSBP07858 339 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 HIST1H2AGP0C0S8 130 aaPredicted RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 HIST1H2ADP20671 130 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 IVDP26440 423 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 DR1Q01658 176 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 CBLBQ13191 982 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 SP140Q13342 867 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 FASTKQ14296 549 aaKnown RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 MYBPC3Q14896 1274 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 NKG7Q16617 165 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 UBE2R2Q712K3 238 aaPredicted RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 CREG2Q8IUH2 290 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 AGGF1Q8N302 714 aaeCLIP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 GALNT16Q8N428 558 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 CD200R1Q8TD46 325 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 ZNF480Q8WV37 535 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 RERGQ96A58 199 aaPredicted RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 MIB2Q96AX9 1013 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 PDLIM2Q96JY6 352 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 HIST1H2AHQ96KK5 128 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 NAPGQ99747 312 aaPredicted RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 HIST1H2AJQ99878 128 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 TRIM56Q9BRZ2 755 aaKnown RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 H2AFJQ9BTM1 129 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 PARVBQ9HBI1 364 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 SLC22A11Q9NSA0 550 aa13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 ZNF282Q9UDV7 671 aaPredicted RBP13.89□□□□□ -0.19
NIF3L1-205ENST00000409588 KCNE1BA0A087WTH5 132 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 AHSGP02765 367 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 PDGFAP04085 211 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 UMODP07911 640 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 PSMB5P28074 263 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 DHX9Q08211 1270 aaKnown RBP13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 CHAF1BQ13112 559 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 FAM53BQ14153 422 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 SLC9A5Q14940 896 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 PRTGQ2VWP7 1150 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 FRMPD2BQ6IN97 320 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 ZNF425Q6IV72 752 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 SUSD1Q6UWL2 747 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 PAQR7Q86WK9 346 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 BBOF1Q8ND07 529 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 COL26A1Q96A83 441 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 PNPLA2Q96AD5 504 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 THAP11Q96EK4 314 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 CERS2Q96G23 380 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 SLC30A3Q99726 388 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 ACAT2Q9BWD1 397 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 TRIM54Q9BYV2 358 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 TMEM184CQ9NVA4 438 aa13.88□□□□□ -0.19
NIF3L1-205ENST00000409588 PCM1Q15154 2024 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 IGLV3-12A0A075B6K2 115 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 LOC105369274A0A096LPK9 316 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 LOC102723532A0A0G2JNH3 316 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 PABPN1LA6NDY0 278 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 A6NL46 340 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 H0YGG7 62 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 CNOT3O75175 753 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 VPS4BO75351 444 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 SYF2O95926 243 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 EIF2S1P05198 315 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 NR1D1P20393 614 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 ARL4CP56559 192 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 IL2P60568 153 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 ARF3P61204 181 aaPredicted RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 NDUFA9Q16795 377 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 BBS9Q3SYG4 887 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 THEMIS2Q5TEJ8 643 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 FAM69BQ5VUD6 431 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 IRAK1BP1Q5VVH5 260 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 HIBCHQ6NVY1 386 aaPredicted RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 JMJD6Q6NYC1 403 aaPredicted RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 PPP1R32Q7Z5V6 425 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 LRRC56Q8IYG6 542 aaPredicted RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 OR4N4Q8N0Y3 316 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 MYO1HQ8N1T3 1032 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 GALNT11Q8NCW6 608 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 GIMAP7Q8NHV1 300 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 ANKRD7Q92527 254 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 PDLIM5Q96HC4 596 aaKnown RBP13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 OR2A5Q96R48 311 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 SPSB2Q99619 263 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 NUDT9Q9BW91 350 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 SLAMF7Q9NQ25 335 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 TAC3Q9UHF0 121 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 CDC23Q9UJX2 597 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 VPS4AQ9UN37 437 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 VWA7Q9Y334 891 aa13.87□□□□□ -0.19
NIF3L1-205ENST00000409588 ZIC2O95409 532 aaPredicted RBP13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 MCM3P25205 808 aa13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 OR1D4P47884 311 aa13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 AP1S2P56377 157 aa13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 RPS15AP62244 130 aaKnown RBP13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 MPP1Q00013 466 aa13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 CUL1Q13616 776 aa13.86□□□□□ -0.19
NIF3L1-205ENST00000409588 IGFBP7Q16270 282 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms