RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MBLAC1A4D2B0 266 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 KMOO15229 486 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 HSD17B1P14061 328 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 SEMA3BQ13214 749 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 MAD2L1Q13257 205 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 HECTD3Q5T447 861 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 TYW3Q6IPR3 259 aaKnown RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 ZFP90Q8TF47 636 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 ZNF599Q96NL3 588 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 OR2B2Q9GZK3 357 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 MKRN2Q9H000 416 aaKnown RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 TTYH1Q9H313 450 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 ZDHHC6Q9H6R6 413 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 CTPS2Q9NRF8 586 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 RAB23Q9ULC3 237 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 EFCAB9A8MZ26 197 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 ANKRD66B4E2M5 251 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 M0R129 80 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 AP1G1O43747 822 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 TULP3O75386 442 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 VIPP01282 170 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 TNFRSF1BP20333 461 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 CCL23P55773 120 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 POU6F2P78424 691 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 SPIBQ01892 262 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 RAPSNQ13702 412 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 C21orf62-AS1Q17RA5 79 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 IFNL1Q8IU54 200 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 RNF175Q8N4F7 328 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 ACDQ96AP0 544 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 UBXN10Q96LJ8 280 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 DYRK4Q9NR20 520 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 C14orf119Q9NWQ9 140 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 CNOT11Q9UKZ1 510 aaKnown RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 TARM1B6A8C7 271 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 FPGTO14772 594 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 GJB5O95377 273 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 CLDN7O95471 211 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 FDXRP22570 491 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 CCND3P30281 292 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 OR1E2P47887 323 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 YBEYP58557 167 aaPredicted RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 RPS14P62263 151 aaKnown RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 RACK1P63244 317 aaKnown RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 FAPQ12884 760 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 SERINC3Q13530 473 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 SKIV2LQ15477 1246 aaKnown RBP11.63□□□□□ -0.55
HMGB1-206ENST00000405805 FAM180BQ6P0A1 224 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 NDNFQ8TB73 568 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 TBC1D15Q8TC07 691 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 ST8SIA2Q92186 375 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 RIT1Q92963 219 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 MED30Q96HR3 178 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 NTN4Q9HB63 628 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 NKIRAS2Q9NYR9 191 aa11.63□□□□□ -0.55
HMGB1-206ENST00000405805 K7ERQ8 282 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 TPST2O60704 377 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 B3GALT4O96024 378 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 FCER2P06734 321 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 ALDH3B2P48448 385 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 RPL6Q02878 288 aaKnown RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 SWI5Q1ZZU3 235 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 FAM131AQ6UXB0 335 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 ZNF517Q6ZMY9 492 aaPredicted RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 USP43Q70EL4 1123 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 RGL4Q8IZJ4 473 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 GALNT11Q8NCW6 608 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 OR2T11Q8NH01 316 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 OR8K3Q8NH51 312 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 PROKR1Q8TCW9 393 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 UBE2FQ969M7 185 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 GPR45Q9Y5Y3 372 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 IFRD1O00458 451 aaPredicted RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 MT-ND2P03891 347 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 LCKP06239 509 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 TCF3P15923 654 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 CTSKP43235 329 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 CDH12P55289 794 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 GANABQ14697 944 aaKnown RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 INO80DQ53TQ3 878 aaPredicted RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 CLVS2Q5SYC1 327 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 TRIB2Q92519 343 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 C1orf109Q9NX04 203 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 MALT1Q9UDY8 824 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 CPQQ9Y646 472 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 COL11A1P12107 1806 aaPredicted RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 GNB5O14775 395 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 CYP11A1P05108 521 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 OGNP20774 298 aaKnown RBP11.62□□□□□ -0.55
HMGB1-206ENST00000405805 ALKAL1Q6UXT8 129 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 PGBD5Q8N414 524 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 EGLN2Q96KS0 407 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 ART5Q96L15 291 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 IL4I1Q96RQ9 567 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 AIFM2Q9BRQ8 373 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 TEX12Q9BXU0 123 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 DERL2Q9GZP9 239 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 KATNBL1Q9H079 304 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 DCSTAMPQ9H295 470 aa11.62□□□□□ -0.55
HMGB1-206ENST00000405805 CACYBPQ9HB71 228 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms