RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 HRASLS2Q9NWW9 162 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 KCNK4Q9NYG8 393 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 KLHL14Q9P2G3 628 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 LRIT1Q9P2V4 623 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 ZDHHC2Q9UIJ5 367 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 APOBEC2Q9Y235 224 aaKnown RBP13.72□□□□□ -0.21
SKA1-202ENST00000398452 ASB1Q9Y576 335 aa13.72□□□□□ -0.21
SKA1-202ENST00000398452 ANKRD12Q6UB98 2062 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 PRAMEF33A0A0G2JMD5 474 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 A0A0G2JND7 137 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 OR6C74A6NCV1 312 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 OR7A17O14581 309 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 HDAC3O15379 428 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 NUDT21O43809 227 aaKnown RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 PCDHGA12O60330 932 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 LRP3O75074 770 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 UBXN7O94888 489 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 FKBP9O95302 570 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 FGF4P08620 206 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 GLB1P16278 677 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 DRD4P21917 467 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 CCR8P51685 355 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 ARFIP2P53365 341 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 EPHA4P54764 986 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 SH3BP2P78314 561 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 GABPB1Q06547 395 aaPredicted RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 IFT88Q13099 833 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 SHBQ15464 509 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 ICE2Q659A1 982 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 ACAD11Q709F0 780 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 SYVN1Q86TM6 617 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 DDIASQ8IXT1 998 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 LRRC56Q8IYG6 542 aaPredicted RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 KYQ8NBH2 561 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 ANKK1Q8NFD2 765 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 OR52B6Q8NGF0 335 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 PTCD3Q96EY7 689 aaKnown RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 THOC1Q96FV9 657 aaKnown RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 RILPQ96NA2 401 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 CDK15Q96Q40 435 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 CCT7Q99832 543 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 AIF1LQ9BQI0 150 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 PLCD4Q9BRC7 762 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 SLC29A3Q9BZD2 475 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 C20orf27Q9GZN8 174 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 EPB41L1Q9H4G0 881 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 CAAP1Q9H8G2 361 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 PELI2Q9HAT8 420 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 IL21RQ9HBE5 538 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 RXFP3Q9NSD7 469 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 HAO1Q9UJM8 370 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 DCTN4Q9UJW0 460 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 PADI4Q9UM07 663 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 USH1CQ9Y6N9 552 aa13.71□□□□□ -0.21
SKA1-202ENST00000398452 TDRD6O60522 2096 aaKnown RBP13.71□□□□□ -0.21
SKA1-202ENST00000398452 TNRC6BQ9UPQ9 1833 aaKnown RBP13.71□□□□□ -0.22
SKA1-202ENST00000398452 E7EQ34 232 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 SLC30A4O14863 429 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 MAP3K7O43318 606 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 FOXD2O60548 495 aaPredicted RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 DIAPH2O60879 1101 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ULK1O75385 1050 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 SKAP2O75563 359 aaPredicted RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 PROS1P07225 676 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 CAPN1P07384 714 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ZNF806P0C7X5 589 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ZNF883P0CG24 379 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 C1GALT1C1LP0DN25 315 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 JUPP14923 745 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 NPPBP16860 134 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 POLR2CP19387 275 aaPredicted RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 ALDH4A1P30038 563 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 AQP5P55064 265 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ERVPABLB-1P60509 514 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 PRDX1Q06830 199 aaKnown RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 TRAF3Q13114 568 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 TBCCQ15814 346 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 PDCD2Q16342 344 aaPredicted RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 CPSF6Q16630 551 aaKnown RBP eCLIP13.7□□□□□ -0.22
SKA1-202ENST00000398452 IMPG1Q17R60 797 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 GGTA1PQ4G0N0 100 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 CES4AQ5XG92 561 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ATG9BQ674R7 924 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 CLEC6AQ6EIG7 209 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 TCEAL6Q6IPX3 200 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 GRHL2Q6ISB3 625 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 NXPE4Q6UWF7 544 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ZNF761Q86XN6 746 aaPredicted RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 EID2Q8N6I1 236 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 DCBLD1Q8N8Z6 715 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 CCDC197Q8NCU1 140 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ZNF473Q8WTR7 871 aaKnown RBP13.7□□□□□ -0.22
SKA1-202ENST00000398452 NAT6Q93015 286 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 TCEAL3Q969E4 200 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 NEIL2Q969S2 332 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 TBC1D10AQ9BXI6 508 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 EHD1Q9H4M9 534 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 RIC8BQ9NVN3 520 aa13.7□□□□□ -0.22
SKA1-202ENST00000398452 ACTR10Q9NZ32 417 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms