RNA–Protein interactions for RNA: ENST00000389328.8

TRAPPC9-201, Transcript of trafficking protein particle complex 9, humanhuman

TSL 2 BASIC

Gene TRAPPC9, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-201ENST00000389328 SERINC3Q13530 473 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 SMN1Q16637 294 aaKnown RBP12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 BICRALQ6AI39 1079 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 TNFAIP8L2Q6P589 184 aaPredicted RBP12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 OR8H3Q8N146 312 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 PELI3Q8N2H9 469 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 Q8N9G6 341 aaPredicted RBP12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 IGSF8Q969P0 613 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 ASPNQ9BXN1 380 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 CPNE5Q9HCH3 593 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 ANKHQ9HCJ1 492 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 TREX1Q9NSU2 369 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 FLRT1Q9NZU1 646 aa12.8□□□□□ -0.36
TRAPPC9-201ENST00000389328 KIAA1551Q9HCM1 1747 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ZBTB42B2RXF5 422 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 MPZL2O60487 215 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 MTX2O75431 263 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ALPLP05186 524 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 CKMT1AP12532 417 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 KDELR2P33947 212 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 DUOXA1Q1HG43 343 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 SETMARQ53H47 684 aaPredicted RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 FRG2Q64ET8 278 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 MBOAT1Q6ZNC8 495 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 C9orf43Q8TAL5 461 aaPredicted RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ZNF486Q96H40 463 aaPredicted RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 MAELQ96JY0 434 aaKnown RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 FRG2BQ96QU4 278 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 POLR2J3Q9H1A7 115 aaKnown RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 NLE1Q9NVX2 485 aaPredicted RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 OAS3Q9Y6K5 1087 aaKnown RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 A0A0U1RQS6 177 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 KIAA0513O60268 411 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 CD40LGP29965 261 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 STX4Q12846 297 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 TARDBPQ13148 414 aaKnown RBP eCLIP12.79□□□□□ -0.362e-6■■■■□ 25.6
TRAPPC9-201ENST00000389328 WSCD2Q2TBF2 565 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 TBPL2Q6SJ96 375 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 IZUMO1Q8IYV9 350 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 C7orf57Q8NEG2 295 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 LRRC20Q8TCA0 184 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 CRELD1Q96HD1 420 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 CEP295NLQ96MC4 621 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ZNF607Q96SK3 696 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 SLC32A1Q9H598 525 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 DNAJC27Q9NZQ0 273 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 CCDC59Q9P031 241 aaKnown RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 GULP1Q9UBP9 304 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 PRELID1Q9Y255 219 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 B3GNT3Q9Y2A9 372 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 PRAMEF33A0A0G2JMD5 474 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ORC5O43913 435 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 PRAMEF10O60809 474 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 SLC2A2P11168 524 aaPredicted RBP12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ITGB4P16144 1822 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 MAPK8P45983 427 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 DPY19L1Q2PZI1 675 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 PLA2G4EQ3MJ16 856 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ATG9BQ674R7 924 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 ERAP2Q6P179 960 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 TMEM248Q9NWD8 314 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 GPR83Q9NYM4 423 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 VPS29Q9UBQ0 182 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 POFUT2Q9Y2G5 429 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 PCDHB14Q9Y5E9 798 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 CORINQ9Y5Q5 1042 aa12.79□□□□□ -0.36
TRAPPC9-201ENST00000389328 NME6O75414 186 aaPredicted RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 POLR2EP19388 210 aaKnown RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 MAGEA12P43365 314 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 PTCHD3Q3KNS1 767 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 PIK3R6Q5UE93 754 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 ASB18Q6ZVZ8 466 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 CNTN4Q8IWV2 1026 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 TMEM40Q8WWA1 233 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 RASSF5Q8WWW0 418 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 COL26A1Q96A83 441 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 FRMD6Q96NE9 622 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 COL22A1Q8NFW1 1626 aaPredicted RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 NFKBIEO00221 500 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 STX11O75558 287 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 UPK1BO75841 260 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 GBAP04062 536 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 RPL3P39023 403 aaKnown RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 SCARB2Q14108 478 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 VMACQ2NL98 169 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 FAM219BQ5XKK7 198 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 CACUL1Q86Y37 369 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 UMODL1-AS1Q8N2C9 162 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 C1orf52Q8N6N3 182 aaKnown RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 AQP11Q8NBQ7 271 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 ISL2Q96A47 359 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 KRCC1Q9NPI7 259 aaPredicted RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 TSPAN4O14817 238 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 PRAMEF11O60813 436 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 EPOP01588 193 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 RPLP2P05387 115 aaKnown RBP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 BMP4P12644 408 aa12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 CSTF2P33240 577 aaKnown RBP eCLIP12.78□□□□□ -0.36
TRAPPC9-201ENST00000389328 CHRNA6Q15825 494 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms