RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NCDNQ9UBB6 729 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 SNX10Q9Y5X0 201 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 MAP2P11137 1827 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 UPK1BO75841 260 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 TGFB3P10600 412 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 HSD11B1P28845 292 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PTPN9P43378 593 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 DSC3Q14574 896 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 NTRK2Q16620 822 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 UGT3A2Q3SY77 523 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 TMEM205Q6UW68 189 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 S100A7AQ86SG5 101 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 DNAJC22Q8N4W6 341 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 OR5B17Q8NGF7 314 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 OR1E3Q8WZA6 343 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 NSMAFQ92636 917 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 LENG9Q96B70 501 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 MAP3K14Q99558 947 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 BARD1Q99728 777 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 NANSQ9NR45 359 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 EVA1BQ9NVM1 165 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PRG4Q92954 1404 aaPredicted RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 CLIC1O00299 241 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TBX10O75333 385 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SPDEFO95238 335 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 EDNRAP25101 427 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 MSX2P35548 267 aaPredicted RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 GPX6P59796 221 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SNTB2Q13425 540 aaKnown RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 KIAA1614Q5VZ46 1190 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SAMD12Q8N8I0 201 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 AGBL3Q8NEM8 1001 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 LINGO1Q96FE5 620 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TMEM47Q9BQJ4 181 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 ZNF341Q9BYN7 854 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SLC6A17Q9H1V8 727 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 F5H5P2 479 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TOR1AO14656 332 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 NMT2O60551 498 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 RETP07949 1114 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 ZNF84P51523 738 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 DBPQ10586 325 aaPredicted RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 CHIT1Q13231 466 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SEMA5AQ13591 1074 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 LRRC38Q5VT99 294 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TMEM200AQ86VY9 491 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 CRYBG2Q8N1P7 616 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 CPT1BQ92523 772 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TM9SF4Q92544 642 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 AHCYL2Q96HN2 611 aaKnown RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 RBCK1Q9BYM8 510 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 ZDHHC11Q9H8X9 412 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TIGARQ9NQ88 270 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 PPP1R14DQ9NXH3 145 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 OAZ3Q9UMX2 235 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 WASHC1A8K0Z3 465 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 CDH12P55289 794 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 MTMR2Q13614 643 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 WASH2PQ6VEQ5 465 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TNS4Q8IZW8 715 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 PSD4Q8NDX1 1056 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TP63Q9H3D4 680 aaPredicted RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 DUSP22Q9NRW4 184 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 TFPTP0C1Z6 253 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 OR12D2P58182 307 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 HNRNPA0Q13151 305 aaKnown RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 LAPTM5Q13571 262 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 MEDAGQ5VYS4 303 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 DUPD1Q68J44 220 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 OR6K6Q8NGW6 343 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 ADAMTS15Q8TE58 950 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 RXFP2Q8WXD0 754 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 PIGBQ92521 554 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 CDKN2AIPNLQ96HQ2 116 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 OR2M2Q96R28 347 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 ZNF559Q9BR84 538 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 COQ3Q9NZJ6 369 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SNCAIPQ9Y6H5 919 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SPAG17Q6Q759 2223 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 NOBOXO60393 691 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 IGSF6O95976 241 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 USP17L8P0C7I0 530 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 CD34P28906 385 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 MAT2AP31153 395 aaKnown RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 RAP1GAP2Q684P5 730 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 FIGNL1Q6PIW4 674 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 IQCHQ86VS3 1027 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 CYP4X1Q8N118 509 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 NATD1Q8N6N6 113 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 OR52J3Q8NH60 311 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 ANKMY1Q9P2S6 941 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 PCDHAC2Q9Y5I4 1007 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 GLYATL1P3A0A0U1RQE8 302 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SNCAP37840 140 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 MC3RP41968 323 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 NDST1P52848 882 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 SRSF11Q05519 484 aaKnown RBP8.54□□□□□ -1.04
LIG3-202ENST00000378526 HACD4Q5VWC8 232 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 GPR153Q6NV75 609 aa8.54□□□□□ -1.04
LIG3-202ENST00000378526 UNC5AQ6ZN44 842 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms