RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 WDR83Q9BRX9 315 aaKnown RBP12.83□□□□□ -0.35
NPHP4-203ENST00000378169 MRPS33Q9Y291 106 aaKnown RBP12.83□□□□□ -0.35
NPHP4-203ENST00000378169 CAB39Q9Y376 341 aaPredicted RBP12.83□□□□□ -0.35
NPHP4-203ENST00000378169 TOR1BO14657 336 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 CREG1O75629 220 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 GABRB3P28472 473 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PNLIPRP1P54315 467 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 RGS21Q2M5E4 152 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 POMZP3Q6PJE2 187 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 POC5Q8NA72 575 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 MCFD2Q8NI22 146 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 IL17FQ96PD4 163 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PKP4Q99569 1192 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 MEAF6Q9HAF1 191 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PTGFRNQ9P2B2 879 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 NME7Q9Y5B8 376 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 H3BNX3 289 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 TMEM189-UBE2V1I3L0A0 370 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 GMFGO60234 142 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 OR6A2O95222 327 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 HLA-DQA2P01906 255 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 GUCA1AP43080 201 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PTPN5P54829 565 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 DSC3Q14574 896 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 C1GALT1C1Q96EU7 318 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 RTP3Q9BQQ7 232 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 LMAN2LQ9H0V9 348 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 SMURF2Q9HAU4 748 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 C11orf16Q9NQ32 467 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 DLGAP4Q9Y2H0 992 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 ARAP2Q8WZ64 1704 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 A0A0J9YVX5 310 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 GLOD5A6NK44 160 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 H7BY64 318 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PLK4O00444 970 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 ITGBL1O95965 494 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-203ENST00000378169 BCKDHAP12694 445 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 SRCP12931 536 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PRG2P13727 222 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 ITPKBP27987 946 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 RFC2P35250 354 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 CTSOP43234 321 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-203ENST00000378169 CCR3P51677 355 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 CCR8P51685 355 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 CLCN4P51793 760 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 CNPY1Q3B7I2 92 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 NT5C3BQ969T7 300 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PRAP1Q96NZ9 151 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 PLGRKTQ9HBL7 147 aa12.83□□□□□ -0.36
NPHP4-203ENST00000378169 ECM29Q5VYK3 1845 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 PRSS51A0A1B0GVH4 220 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 NME6O75414 186 aaPredicted RBP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 ERVPABLB-1P60509 514 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SLC9A5Q14940 896 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 NOXRED1Q6NXP6 359 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 FGD2Q7Z6J4 655 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SVOPLQ8N434 492 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 OR5K1Q8NHB7 308 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 RIPOR3Q96MK2 946 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 PHF12Q96QT6 1004 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SLC22A12Q96S37 553 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 CHCHD6Q9BRQ6 235 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 XKR8Q9H6D3 395 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 TREX1Q9NSU2 369 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 NPIPB15A6NHN6 443 aaPredicted RBP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 GTPBP1O00178 669 aaKnown RBP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 MUSKO15146 869 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 PGFP49763 221 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 MS4A2Q01362 244 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 DSC1Q08554 894 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 GRSF1Q12849 480 aaKnown RBP eCLIP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 KRR1Q13601 381 aaKnown RBP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SCARB2Q14108 478 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 GALNT18Q6P9A2 607 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 CRTC1Q6UUV9 634 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 NUDT13Q86X67 352 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 TCEAL8Q8IYN2 117 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 CMTR2Q8IYT2 770 aaKnown RBP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SCRN2Q96FV2 425 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SERHL2Q9H4I8 314 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 PALMDQ9NP74 551 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SERHLQ9NQF3 203 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 POLR1DQ9Y2S0 133 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 H3BSA7 217 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 CCNDBP1O95273 360 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 PDYNP01213 254 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 ALPPL2P10696 532 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 NCBP2P52298 156 aaKnown RBP eCLIP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 PRR5P85299 388 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 DHCR24Q15392 516 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 XKR4Q5GH76 650 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 KBTBD8Q8NFY9 601 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 OR4E2Q8NGC2 313 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SMPDL3AQ92484 453 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SLC39A13Q96H72 371 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 SLC35G5Q96KT7 338 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 KATNBL1Q9H079 304 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 GSTO2Q9H4Y5 243 aa12.82□□□□□ -0.36
NPHP4-203ENST00000378169 LIN28AQ9H9Z2 209 aaKnown RBP12.82□□□□□ -0.36
NPHP4-203ENST00000378169 DNAAF2Q9NVR5 837 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms