RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 PROM1O43490 865 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 TRUB2O95900 331 aaKnown RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 MGAT1P26572 445 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 DSG3P32926 999 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 STAT5AP42229 794 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 SEMA3BQ13214 749 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 PARP15Q460N3 678 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 SPANXN3Q5MJ09 141 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 PMF1Q6P1K2 205 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 SAMD7Q7Z3H4 446 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 FAM35AQ86V20 835 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 SVBPQ8N300 66 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 OR52K1Q8NGK4 314 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 CNIH3Q8TBE1 160 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 DDX1Q92499 740 aaKnown RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 NSMAFQ92636 917 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 RAB7BQ96AH8 199 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 RAD51AP1Q96B01 352 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 QRFPRQ96P65 431 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 KCTD15Q96SI1 283 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 AAR2Q9Y312 384 aaKnown RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 A0A1B0GVI7 797 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 UBE2QL1A1L167 161 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 RB1P06400 928 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 POU3F3P20264 500 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 ACO1P21399 889 aaKnown RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 TGFB2P61812 414 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 SPDYE7PQ495Y7 208 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 PKN3Q6P5Z2 889 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 GCNT7Q6ZNI0 430 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF566Q969W8 418 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 ZBED3Q96IU2 234 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 EBNA1BP2Q99848 306 aaKnown RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 LMAN2LQ9H0V9 348 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 TREM1Q9NP99 234 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 AGPAT4Q9NRZ5 378 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 DDIT4Q9NX09 232 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 HCN2Q9UL51 889 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 A0A0X1KG70 313 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 ACOT8O14734 319 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF682O95780 498 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 AP2A1O95782 977 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 F9P00740 461 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 LTA4HP09960 611 aaKnown RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 UNGP13051 313 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 LHCGRP22888 699 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 TNFSF8P32971 234 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 CDKN2BP42772 138 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 SLC6A3Q01959 620 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 PUM1Q14671 1186 aaKnown RBP eCLIP11.48□□□□□ -0.57
NPHP4-202ENST00000378161 KANK2Q63ZY3 851 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 NOTUMQ6P988 496 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 LRFN4Q6PJG9 635 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 RDH11Q8TC12 318 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 NFASCO94856 1347 aa11.48□□□□□ -0.57
NPHP4-202ENST00000378161 GLYATL1P3A0A0U1RQE8 302 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 FAM221BA6H8Z2 402 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 CLDN24A6NM45 220 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ALPLP05186 524 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 HOXD4P09016 255 aaPredicted RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 NR0B1P51843 470 aaKnown RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 BPIFB3P59826 476 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 NPNTQ6UXI9 565 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ZER1Q7Z7L7 766 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 TSPYL5Q86VY4 417 aaPredicted RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ARFGAP1Q8N6T3 406 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF454Q8N9F8 522 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 GLIS1Q8NBF1 620 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 C7orf50Q9BRJ6 194 aaKnown RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 BCAS3Q9H6U6 928 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 SMURF2Q9HAU4 748 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ATP13A1Q9HD20 1204 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ZNF639Q9UID6 485 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 SH3BGRL2Q9UJC5 107 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 BAZ2AQ9UIF9 1905 aaKnown RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 KIF13AQ9H1H9 1805 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 SLIT2O94813 1529 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 TRBV23-1A0A0A0MS06 115 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 KIAA0513O60268 411 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 RRASP10301 218 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 NR6A1Q15406 480 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ALG11Q2TAA5 492 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 DAW1Q8N136 415 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 CHDHQ8NE62 594 aaPredicted RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 OR2T35Q8NGX2 323 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 SNX33Q8WV41 574 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 ATOH1Q92858 354 aaPredicted RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 FAM84AQ96KN4 292 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 FICDQ9BVA6 458 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 OR51M1Q9H341 326 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 LEF1Q9UJU2 399 aaPredicted RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 CRYBG1Q9Y4K1 1723 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 HPRP00739 348 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 C4BPAP04003 597 aaKnown RBP11.47□□□□□ -0.57
NPHP4-202ENST00000378161 GRIA1P42261 906 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 TNFRSF17Q02223 184 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 MSS51Q4VC12 460 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 SLC22A9Q8IVM8 553 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 DCUN1D3Q8IWE4 304 aa11.47□□□□□ -0.57
NPHP4-202ENST00000378161 DENND6BQ8NEG7 585 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms