RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 OR51F1A6NGY5 319 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 VPS26AO75436 327 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 SLCO2B1O94956 709 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 GAS8O95995 478 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 ANXA5P08758 320 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 ITGAMP11215 1152 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 CD1EP15812 388 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 PTPN7P35236 360 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 CETN2P41208 172 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 KIR3DL1P43629 444 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 KRTAP10-9P60411 292 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 LSM11P83369 360 aaKnown RBP eCLIP13.15□□□□□ -0.39e-7■■■□□ 16.4
VPS29-201ENST00000360579 PCOLCEQ15113 449 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 PRTGQ2VWP7 1150 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 GARNL3Q5VVW2 1013 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 NEK10Q6ZWH5 1172 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 LINC00523Q86TU6 105 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 SPPL2CQ8IUH8 684 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 OR4N4Q8N0Y3 316 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 EID3Q8N140 333 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 MAGEC3Q8TD91 643 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 KRT35Q92764 455 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 GPR137Q96N19 417 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 OSBPL8Q9BZF1 889 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 OR2A25A4D2G3 310 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 TTI1O43156 1089 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 CBFA2T2O43439 604 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 TJP3O95049 919 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 CELA2AP08217 269 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 CMPK1P30085 196 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 SLC26A3P40879 764 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 CCNFP41002 786 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 PMP22Q01453 160 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 AARS2Q5JTZ9 985 aaKnown RBP13.14□□□□□ -0.31
VPS29-201ENST00000360579 TMEM205Q6UW68 189 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 PHF10Q8WUB8 498 aaKnown RBP13.14□□□□□ -0.31
VPS29-201ENST00000360579 METTL21AQ8WXB1 218 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 MMABQ96EY8 250 aaPredicted RBP13.14□□□□□ -0.31
VPS29-201ENST00000360579 POM121Q96HA1 1249 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 IMMP1LQ96LU5 166 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 ZNF354BQ96LW1 612 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 ENKD1Q9H0I2 346 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 RIMKLBQ9ULI2 386 aa13.14□□□□□ -0.31
VPS29-201ENST00000360579 PCNX1Q96RV3 2341 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 FAM227AF5H4B4 570 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 H0YGG7 62 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 TXNDC9O14530 226 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 KPNA5O15131 536 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 MFAP3LO75121 409 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 GOT2P00505 430 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 CYC1P08574 325 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 C8orf89P0DMQ9 161 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 AOAHP28039 575 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 PSMB5P28074 263 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 CTNNA1P35221 906 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 MAGEA1P43355 309 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 ARF3P61204 181 aaPredicted RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 ALDH6A1Q02252 535 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 SRSF11Q05519 484 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 CDH17Q12864 832 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 FASTKD1Q53R41 847 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 CSNK1A1LQ8N752 337 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 ACBD4Q8NC06 268 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 OR13J1Q8NGT2 312 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 OR2A1Q8NGT9 310 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 OR4L1Q8NH43 312 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 SKA2Q8WVK7 121 aaPredicted RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 HDAC10Q969S8 669 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 FOPNLQ96NB1 174 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 PANX3Q96QZ0 392 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 FAM118BQ9BPY3 351 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 PIH1D1Q9NWS0 290 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 UTP6Q9NYH9 597 aaKnown RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 SPATA7Q9P0W8 599 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 STOX2Q9P2F5 926 aaPredicted RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 C19orf25Q9UFG5 118 aaPredicted RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 MKL2Q9ULH7 1088 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 TTC7AQ9ULT0 858 aaPredicted RBP13.13□□□□□ -0.31
VPS29-201ENST00000360579 PCDHA3Q9Y5H8 950 aa13.13□□□□□ -0.31
VPS29-201ENST00000360579 SYCE3A1L190 88 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 ASPDHA6ND91 283 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 A8MUI8 341 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 C1orf105O95561 183 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 METTL18O95568 372 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 PKMP14618 531 aaKnown RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 CD46P15529 392 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 ABOP16442 354 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 EEF1DP29692 281 aaKnown RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 CDSNQ15517 529 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 CCDC38Q502W7 563 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 PLAG1Q6DJT9 500 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 FBXO42Q6P3S6 717 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 MEX3BQ6ZN04 569 aaKnown RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 CNGA4Q8IV77 575 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 AMER3Q8N944 861 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 DNAAF3Q8N9W5 541 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 FAM71DQ8N9W8 422 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 TMEM178AQ8NBL3 297 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 FAM98AQ8NCA5 519 aaKnown RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 OR6P1Q8NGX9 317 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms