RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 COMTD1Q86VU5 262 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HPS6Q86YV9 775 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ARID3BQ8IVW6 561 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 TMEFF1Q8IYR6 380 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DPP10Q8N608 796 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 RNF152Q8N8N0 203 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MRPL43Q8N983 215 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 SNX31Q8N9S9 440 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DCAF4L2Q8NA75 395 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR52B6Q8NGF0 335 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR9I1Q8NGQ6 314 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR14C36Q8NHC7 312 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 BPIFB1Q8TDL5 484 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 POF1BQ8WVV4 589 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 RAX2Q96IS3 184 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 NSL1Q96IY1 281 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MRGPRX4Q96LA9 322 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SGCZQ96LD1 299 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TFB2MQ9H5Q4 396 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 EPS8L2Q9H6S3 715 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 RDH14Q9HBH5 336 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TLR8Q9NR97 1041 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 GALNT8Q9NY28 637 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CORO1CQ9ULV4 474 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 SLC27A6Q9Y2P4 619 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PRG3Q9Y2Y8 225 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 NAALAD2Q9Y3Q0 740 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 KIAA0100Q14667 2235 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 PTPRBP23467 1997 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 AKAP13Q12802 2813 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SYNJ2BP-COX16A0A087WUM0 186 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCDC195A0A1B0GUA6 201 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 A0A1B0GVM2 712 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TBKBP1A7MCY6 615 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 B9A039 149 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 H3BMH7 237 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 UBXN8O00124 270 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DFFAO00273 331 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LEFTY2O00292 366 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 COPEO14579 308 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ADAM10O14672 748 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LIN7AO14910 233 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 VILLO15195 856 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CD3EAPO15446 510 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 PEX1O43933 1283 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ZNF189O75820 626 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 FGF18O76093 207 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SLCO2B1O94956 709 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 NDST3O95803 873 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MT-ND3P03897 115 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FGF1P05230 155 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ALPIP09923 528 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MYL4P12829 197 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CEBPBP17676 345 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CHRM3P20309 590 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ATP6V1C1P21283 382 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SLC6A2P23975 617 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OXTRP30559 389 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DRD3P35462 400 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 AVPR1AP37288 418 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ARL4AP40617 200 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MAGEA2P43356 314 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ALDH1A3P47895 512 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PPP3CCP48454 512 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ACADVLP49748 655 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CLCN5P51795 746 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 GEMP55040 296 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FCHO2Q0JRZ9 810 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MTAPQ13126 283 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 GPS2Q13227 327 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 BOP1Q14137 746 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 USP39Q53GS9 565 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 C3orf38Q5JPI3 329 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LRIF1Q5T3J3 769 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ATXN7L2Q5T6C5 722 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 C9orf64Q5T6V5 341 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 NAPEPLDQ6IQ20 393 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ZC3H14Q6PJT7 736 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 SPRED1Q7Z699 444 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TMEM179BQ7Z7N9 219 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LINC00523Q86TU6 105 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TMEM25Q86YD3 366 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TMPRSS6Q8IU80 811 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TMEM126BQ8IUX1 230 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCDC71Q8IV32 467 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 DENND1CQ8IV53 801 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FBXW8Q8N3Y1 598 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ATPAF2Q8N5M1 289 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TEX9Q8N6V9 391 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FAM86B1Q8N7N1 296 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 GBP7Q8N8V2 638 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR4K2Q8NGD2 314 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FAM168AQ92567 244 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 KCNJ9Q92806 393 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ZNF597Q96LX8 424 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 GLT1D1Q96MS3 346 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LRRC37BQ96QE4 947 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 VPS35Q96QK1 796 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SEMA3CQ99985 751 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 NTMT1Q9BV86 223 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms