RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 DPY19L1Q2PZI1 675 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF284Q2VY69 593 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 CCSMST1Q4G0I0 132 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 ARHGAP15Q53QZ3 475 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 RBM48Q5RL73 367 aaKnown RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 SERPINA11Q86U17 422 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 BTN2A2Q8WVV5 523 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 TUBA1CQ9BQE3 449 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 FANCEQ9HB96 536 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 AASDHPPTQ9NRN7 309 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 CLIC1O00299 241 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 RHOP08100 348 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 COX7A2P14406 83 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 XPAP23025 273 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 DDX6P26196 483 aaKnown RBP eCLIP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 EPHA5P54756 1037 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 SRSF11Q05519 484 aaKnown RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 PLPP4Q5VZY2 271 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 ZCCHC8Q6NZY4 707 aaKnown RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 AGTRAPQ6RW13 159 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 ZDHHC21Q8IVQ6 265 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 RASGEF1AQ8N9B8 481 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 CLP1Q92989 425 aaKnown RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 POP5Q969H6 163 aaKnown RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 STOX2Q9P2F5 926 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 IL36AQ9UHA7 158 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 SAMD4AQ9UPU9 718 aaKnown RBP21.1■□□□□ 0.97
SHMT1-202ENST00000352886 HCFC2Q9Y5Z7 792 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 ENGP17813 658 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 STT3AP46977 705 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 TRPC1P48995 793 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 WNT3P56703 355 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF77Q15935 545 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 MEP1AQ16819 746 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 LRRC26Q2I0M4 334 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 DHRS4L2Q6PKH6 230 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF621Q6ZSS3 439 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 RBM23Q86U06 439 aaKnown RBP21.09■□□□□ 0.97
SHMT1-202ENST00000352886 CHDHQ8NE62 594 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-202ENST00000352886 SGCDQ92629 289 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 HDAC2Q92769 488 aaKnown RBP21.09■□□□□ 0.97
SHMT1-202ENST00000352886 NOTCH4Q99466 2003 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ZBBXA8MT70 800 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 QSOX1O00391 747 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 HOXB6P17509 224 aaKnown RBP21.09■□□□□ 0.97
SHMT1-202ENST00000352886 PTPN2P17706 415 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 BDKRB1P46663 353 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 HNRNPFP52597 415 aaKnown RBP21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF33BQ06732 778 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 HIPK1Q86Z02 1210 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 CHPFQ8IZ52 775 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF366Q8N895 744 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ARL10Q8N8L6 244 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 TERB1Q8NA31 727 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 OR4K3Q96R72 315 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 SPATA6Q9NWH7 488 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-202ENST00000352886 VNN3Q9NY84 501 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 TBC1D14Q9P2M4 693 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 CDH7Q9ULB5 785 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 ERVK-11Q9UQG0 969 aa21.09■□□□□ 0.97
SHMT1-202ENST00000352886 LOC100130705A0A1B0GUX0 176 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 TSPAN11A1L157 253 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 PRMT3O60678 531 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 SCN2BO60939 215 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ABCB7O75027 752 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ATG13O75143 517 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 EPN2O95208 641 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 MAGEA2P43356 314 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 RANBP1P43487 201 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 EMP3P54852 163 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ACSM2AQ08AH3 577 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 CTU2Q2VPK5 515 aaKnown RBP21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF805Q5CZA5 627 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 C6orf141Q5SZD1 244 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ACSM2BQ68CK6 577 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ANKRD26P1Q6NSI1 321 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 KIAA0907Q7Z7F0 614 aaPredicted RBP21.08■□□□□ 0.97
SHMT1-202ENST00000352886 CLECL1Q8IZS7 167 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 OR13F1Q8NGS4 319 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 ATL1Q8WXF7 558 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 GLYATL1Q969I3 302 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 CCDC138Q96M89 665 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 SAGE1Q9NXZ1 904 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 TMEFF2Q9UIK5 374 aaPredicted RBP21.08■□□□□ 0.97
SHMT1-202ENST00000352886 RUVBL1Q9Y265 456 aaKnown RBP21.08■□□□□ 0.97
SHMT1-202ENST00000352886 MYO7AQ13402 2215 aa21.08■□□□□ 0.97
SHMT1-202ENST00000352886 MAGEB17A8MXT2 336 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 SH3BGRLO75368 114 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 CPSF4O95639 269 aaKnown RBP21.08■□□□□ 0.96
SHMT1-202ENST00000352886 SLC16A8O95907 504 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 SYN1P17600 705 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 LDLRAP1Q5SW96 308 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 CPZQ66K79 652 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 XAF1Q6GPH4 301 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 ADNP2Q6IQ32 1131 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 DPPA4Q7L190 304 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 TECPR1Q7Z6L1 1165 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 GALNT10Q86SR1 603 aa21.08■□□□□ 0.96
SHMT1-202ENST00000352886 DCP2Q8IU60 420 aaKnown RBP21.08■□□□□ 0.96
SHMT1-202ENST00000352886 GLMNQ92990 594 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms