RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MEAF6Q9HAF1 191 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 TAS2R7Q9NYW3 318 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 ZNF282Q9UDV7 671 aaPredicted RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 DKKL1Q9UK85 242 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 UTS2RQ9UKP6 389 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 REXO2Q9Y3B8 237 aaKnown RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 SMCO3A2RU48 225 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 GSTT2BP0CG30 244 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 ITIH1P19827 911 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 NLGN2Q8NFZ4 835 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 JPH3Q8WXH2 748 aaPredicted RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 CENPNQ96H22 339 aaPredicted RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 MIPEPQ99797 713 aa12.33□□□□□ -0.44
SDC3-201ENST00000336798 RUVBL1Q9Y265 456 aaKnown RBP12.33□□□□□ -0.44
SDC3-201ENST00000336798 PLOD2O00469 737 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PRKACAP17612 351 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PRKD1Q15139 912 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 MBLAC2Q68D91 279 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 ANKRD26P1Q6NSI1 321 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 ARL9Q6T311 187 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 SH3YL1Q96HL8 342 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 ZNF471Q9BX82 626 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 ZNF350Q9GZX5 532 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 ZDHHC4Q9NPG8 344 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 ZNF358Q9NW07 568 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 HMGXB4Q9UGU5 601 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 SLIT1O75093 1534 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 NRP1O14786 923 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PI15O43692 258 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 CDC123O75794 336 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 GABBR2O75899 941 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 SIX3O95343 332 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 L1CAMP32004 1257 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 GGT5P36269 586 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 TIGD5Q53EQ6 642 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 SNX29P2Q8IUI4 249 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 FBXL16Q8N461 479 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PHOSPHO1Q8TCT1 267 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 HNRNPABQ99729 332 aaKnown RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.32□□□□□ -0.44
SDC3-201ENST00000336798 ZNF700Q9H0M5 742 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 COL20A1Q9P218 1284 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 GNG8Q9UK08 70 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 A0A1W2PPL8 197 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 NARSO43776 548 aaKnown RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 HCAR3P49019 387 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 FPGSQ05932 587 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 SMYD5Q6GMV2 418 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 TRMT10BQ6PF06 316 aaKnown RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 HSDL2Q6YN16 418 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 DNAJB7Q7Z6W7 309 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 OR10G2Q8NGC3 310 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 CEP76Q8TAP6 659 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 CNDP2Q96KP4 475 aaKnown RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 GATA5Q9BWX5 397 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 UNC93B1Q9H1C4 597 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 SLC22A14Q9Y267 594 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 EFCAB9A8MZ26 197 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 ENGP17813 658 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 HK1P19367 917 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 CSTF2P33240 577 aaKnown RBP eCLIP12.32□□□□□ -0.44
SDC3-201ENST00000336798 ARL2P36404 184 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 RAB8AP61006 207 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 CHRNA6Q15825 494 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 OR4F3Q6IEY1 312 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 ADGRD1Q6QNK2 874 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PAQR3Q6TCH7 311 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 GPAT4Q86UL3 456 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PIM3Q86V86 326 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 KLHL36Q8N4N3 616 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 SLC7A6OSQ96CW6 309 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 C11orf84Q9BUA3 381 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 FBXL12Q9NXK8 326 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 RAB26Q9ULW5 256 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 MEMO1Q9Y316 297 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 WNT6Q9Y6F9 365 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 RORCP51449 518 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PITPNAQ00169 270 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PRAMEF14Q5SWL7 426 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 PRAMEF13Q5VWM6 474 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 RAB11FIP2Q7L804 512 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 TMED4Q7Z7H5 227 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 OR2L2Q8NH16 312 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 NFKBIDQ8NI38 313 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 HERC2P3Q9BVR0 1158 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 RCOR3Q9P2K3 495 aaPredicted RBP12.32□□□□□ -0.44
SDC3-201ENST00000336798 TMEM5Q9Y2B1 443 aa12.32□□□□□ -0.44
SDC3-201ENST00000336798 GLOD5A6NK44 160 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 BHMG1C9JSJ3 638 aaPredicted RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 ESR1P03372 595 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 PRPS2P11908 318 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 HLA-EP13747 358 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 HOXA10P31260 410 aaPredicted RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 TAS2R39P59534 338 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 LRRC69Q6ZNQ3 347 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 LYSMD3Q7Z3D4 306 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 PHC2Q8IXK0 858 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 GATSQ8NAP1 163 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 SUV39H2Q9H5I1 410 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms