RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 MEIS3P2A8K0S8 358 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 OR2B3O76000 313 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 CKMT1AP12532 417 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 SDHBP21912 280 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 EDNRBP24530 442 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 AFF1P51825 1210 aaKnown RBP13.1□□□□□ -0.31
SKA3-201ENST00000298260 RAD51Q06609 339 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 KCTD2Q14681 263 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 LRRC66Q68CR7 880 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 LAMTOR1Q6IAA8 161 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 CIR1Q86X95 450 aaPredicted RBP13.1□□□□□ -0.31
SKA3-201ENST00000298260 RIOX2Q8IUF8 465 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 ARRDC4Q8NCT1 418 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 LINGO1Q96FE5 620 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 HMCESQ96FZ2 354 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 IMP4Q96G21 291 aaKnown RBP13.1□□□□□ -0.31
SKA3-201ENST00000298260 NUSAP1Q9BXS6 441 aaKnown RBP13.1□□□□□ -0.31
SKA3-201ENST00000298260 GPRC5BQ9NZH0 403 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 LAMA3Q16787 3333 aa13.1□□□□□ -0.31
SKA3-201ENST00000298260 OR7A17O14581 309 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 SNX4O95219 450 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 RETP07949 1114 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 ATXN1LP0C7T5 689 aaKnown RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 ZNF267Q14586 743 aaPredicted RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 TBCEQ15813 527 aaPredicted RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 PAN2Q504Q3 1202 aaKnown RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 TMPRSS11AQ6ZMR5 421 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 GPSM1Q86YR5 675 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 OR4L1Q8NH43 312 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 ZFAND1Q8TCF1 268 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 IPCEF1Q8WWN9 437 aaPredicted RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 KCTD13Q8WZ19 329 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 TSSK3Q96PN8 268 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 SLC25A51Q9H1U9 297 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 ABHD16BQ9H3Z7 469 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 SYTL2Q9HCH5 934 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 ERAP1Q9NZ08 941 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 PCDHGB2Q9Y5G2 931 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 CLCA1A8K7I4 914 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 HAS3O00219 553 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 PEX11BO96011 259 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 CLEC2LP0C7M8 214 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 TGFB3P10600 412 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 POLR2CP19387 275 aaPredicted RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 DNAJA1P31689 397 aaKnown RBP13.09□□□□□ -0.31
SKA3-201ENST00000298260 HSPA7P48741 367 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 STC1P52823 247 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 MAPK12P53778 367 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 UBE3AQ05086 875 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 VEPH1Q14D04 833 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 SSX1Q16384 188 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 FAM131AQ6UXB0 335 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 HASPINQ8TF76 798 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 HSH2DQ96JZ2 352 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 ASPNQ9BXN1 380 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 NFKBIZQ9BYH8 718 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 RRAGCQ9HB90 399 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 IL1RAPQ9NPH3 570 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 HOXC10Q9NYD6 342 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 SPASTQ9UBP0 616 aa13.09□□□□□ -0.31
SKA3-201ENST00000298260 UGT2B17O75795 530 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 LGALS2P05162 132 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 GZMMP51124 257 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 SPDYE7PQ495Y7 208 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 MRNIPQ6NTE8 343 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 IDO2Q6ZQW0 420 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 GOLGA7Q7Z5G4 137 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 PIANPQ8IYJ0 282 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 AADATQ8N5Z0 425 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 OR8H1Q8NGG4 311 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 LRRC20Q8TCA0 184 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 ZBTB18Q99592 522 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 MGLLQ99685 303 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 CCDC32Q9BV29 185 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 DERL2Q9GZP9 239 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 BPIFA1Q9NP55 256 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 MS4A12Q9NXJ0 267 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 TAS2R13Q9NYV9 303 aa13.08□□□□□ -0.31
SKA3-201ENST00000298260 DICER1Q9UPY3 1922 aaKnown RBP13.08□□□□□ -0.32
SKA3-201ENST00000298260 I3L521 148 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 TSPAN4O14817 238 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 MUSKO15146 869 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 WDR47O94967 919 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 TSPAN12O95859 305 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 FPR1P21462 350 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 TACR1P25103 407 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 SOX9P48436 509 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 TARDBPQ13148 414 aaKnown RBP eCLIP13.08□□□□□ -0.32
SKA3-201ENST00000298260 TATDN3Q17R31 274 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 ESCO2Q56NI9 601 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 C10orf62Q5T681 223 aaPredicted RBP13.08□□□□□ -0.32
SKA3-201ENST00000298260 SMYD5Q6GMV2 418 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 ST13P5Q8NFI4 369 aaPredicted RBP13.08□□□□□ -0.32
SKA3-201ENST00000298260 FRMD6Q96NE9 622 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 FEVQ99581 238 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 GON7Q9BXV9 100 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 SRRQ9GZT4 340 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 NSUN3Q9H649 340 aaKnown RBP13.08□□□□□ -0.32
SKA3-201ENST00000298260 IPPKQ9H8X2 491 aa13.08□□□□□ -0.32
SKA3-201ENST00000298260 ARNT2Q9HBZ2 717 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms