RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MKS1Q9NXB0 559 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 KCNN3Q9UGI6 736 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 DDNO94850 711 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CASP9P55211 416 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ZMIZ2Q8NF64 920 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RIPOR3Q96MK2 946 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 FARSAQ9Y285 508 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TRIP12Q14669 1992 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SLC9A3R1O14745 358 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PRAMEF12O95522 483 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TCEA1P23193 301 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 IL12BP29460 328 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 MAPK14Q16539 360 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 LHFPL3Q86UP9 236 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 FERD3LQ96RJ6 166 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SLC39A3Q9BRY0 314 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF649Q9BS31 505 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF226Q9NYT6 803 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 FBXL21Q9UKT6 434 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 DISC1C4P0D8 188 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 NDST3O95803 873 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 IFNA2P01563 188 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 NADK2Q4G0N4 442 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PAQR7Q86WK9 346 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 KCTD13Q8WZ19 329 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TSNAXQ99598 290 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 BRINP2Q9C0B6 783 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 POLR2J2Q9GZM3 115 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 FNIP2Q9P278 1114 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PCDHB1Q9Y5F3 818 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TBC1D3BA6NDS4 549 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SOWAHBA6NEL2 793 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 IL1BP01584 269 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 NOVP48745 357 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 NOMO2Q5JPE7 1267 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ALG1LQ6GMV1 187 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 C1orf216Q8TAB5 229 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 LYARQ9NX58 379 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CYTH4Q9UIA0 394 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PLD2O14939 933 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SEPT4O43236 478 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SLC7A4O43246 635 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CLDN11O75508 207 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SIX1Q15475 284 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TMEM44Q2T9K0 475 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ACBD6Q9BR61 282 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TRIM36Q9NQ86 728 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PLEKHA6Q9Y2H5 1048 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 STRCQ7RTU9 1775 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SCAMP3O14828 347 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PCLAFQ15004 111 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SOWAHAQ2M3V2 549 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 RANBP3Q9H6Z4 567 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 MRM3Q9HC36 420 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 MOCS1Q9NZB8 636 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ILVBLA1L0T0 632 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 GNG2P59768 71 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TLR1Q15399 786 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TSTD2Q5T7W7 516 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 OR5K1Q8NHB7 308 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 HAPLN3Q96S86 360 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 E7ESA3 106 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ITM2AO43736 263 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 UAP1L1Q3KQV9 507 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CLEC12AQ5QGZ9 265 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 MTFR2Q6P444 385 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ADGRG6Q86SQ4 1221 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CAND1Q86VP6 1230 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PCED1BQ96HM7 432 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 PREBQ9HCU5 417 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 C1orf109Q9NX04 203 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 SLC17A6Q9P2U8 582 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 POFUT2Q9Y2G5 429 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 TDRD6O60522 2096 aaKnown RBP9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CLCQ05315 142 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF460Q14592 562 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 MCEMP1Q8IX19 187 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CLEC4CQ8WTT0 213 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 MIOSQ9NXC5 875 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 ASF1AQ9Y294 204 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CDH10Q9Y6N8 788 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 CACNA1DQ01668 2161 aa9.63□□□□□ -0.87
COL6A3-201ENST00000295550 J3QRK9 145 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ASLP04424 464 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 DUS1LQ6P1R4 473 aaKnown RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 SLC44A3Q8N4M1 653 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 FBXL8Q96CD0 374 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MIPEPQ99797 713 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 MAGEB17A8MXT2 336 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 BHMG1C9JSJ3 638 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 KERAO60938 352 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 CYP11A1P05108 521 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 GSTT2P0CG29 244 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 FOXM1Q08050 763 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TAC4Q86UU9 113 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 RAVER1Q8IY67 606 aaKnown RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 ASCC1Q8N9N2 400 aaKnown RBP9.62□□□□□ -0.87
COL6A3-201ENST00000295550 TMEM203Q969S6 136 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 PARPBPQ9NWS1 579 aa9.62□□□□□ -0.87
COL6A3-201ENST00000295550 GSKIPQ9P0R6 139 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms