RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 MAFIPQ8WZ33 124 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 CCM2Q9BSQ5 444 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 HTR3EA5X5Y0 456 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 GRIA2P42262 883 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 TUBA4AP68366 448 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 TSTD2Q5T7W7 516 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 CYP2U1Q7Z449 544 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 UBE2J2Q8N2K1 259 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PPP1R14BQ96C90 147 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 SLC32A1Q9H598 525 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PLCL2Q9UPR0 1127 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 A0A1B0GVI7 797 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PRKCHP24723 683 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 CLEC6AQ6EIG7 209 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 NPLQ9BXD5 320 aaPredicted RBP9.11□□□□□ -0.95
CUX1-201ENST00000292535 PDZD7Q9H5P4 517 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 BRF2Q9HAW0 419 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 AGLP35573 1532 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 SMIM28A0A1B0GU29 152 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 HK1P19367 917 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 DRD4P21917 467 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ARSKQ6UWY0 536 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 OR4K17Q8NGC6 315 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 TOP1MTQ969P6 601 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PTGES2Q9H7Z7 377 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 WASF2Q9Y6W5 498 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 UBXN2BQ14CS0 331 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PON3Q15166 354 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ISLR2Q6UXK2 745 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 MFSD3Q96ES6 412 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 TIGARQ9NQ88 270 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 NUDT15Q9NV35 164 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 TVP23BQ9NYZ1 205 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 CYTH4Q9UIA0 394 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 HERC3Q15034 1050 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PGM2L1Q6PCE3 622 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 OR5K1Q8NHB7 308 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 PTPRMP28827 1452 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 NT5C1B-RDH14C9J2C7 533 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ZNF670-ZNF695F2Z2N8 137 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 B4GALT5O43286 388 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 CILPO75339 1184 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ARL6IP5O75915 188 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ABRAXAS2Q15018 415 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 KREMEN2Q8NCW0 462 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 EVLQ9UI08 416 aaPredicted RBP9.11□□□□□ -0.95
CUX1-201ENST00000292535 HSPA12AO43301 675 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ERI3O43414 337 aaKnown RBP9.11□□□□□ -0.95
CUX1-201ENST00000292535 GNG2P59768 71 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ANKRD46Q86W74 232 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 ORAI3Q9BRQ5 295 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 B3GNT5Q9BYG0 378 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 SLC17A7Q9P2U7 560 aa9.11□□□□□ -0.95
CUX1-201ENST00000292535 RAB15P59190 212 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ARPC4P59998 168 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 RFWD3Q6PCD5 774 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PAOXQ6QHF9 649 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 OR2L2Q8NH16 312 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ZNF599Q96NL3 588 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TMEM168Q9H0V1 697 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PCDHA2Q9Y5H9 948 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TSPAN1O60635 241 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PIAS1O75925 651 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 KDM4BO94953 1096 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ANXA3P12429 323 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 STOML3Q8TAV4 291 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 FAM198AQ9UFP1 575 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 FARS2O95363 451 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 CYP11A1P05108 521 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 E2F1Q01094 437 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 FPGSQ05932 587 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 IL10RBQ08334 325 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 BNIP1Q12981 228 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 TRAM1Q15629 374 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 HFE2Q6ZVN8 426 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ZER1Q7Z7L7 766 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 C7orf61Q8IZ16 206 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 LRRN4Q8WUT4 740 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ACP6Q9NPH0 428 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ZNF358Q9NW07 568 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PACSIN3Q9UKS6 424 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ZBTB48P10074 688 aaPredicted RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 NCK1P16333 377 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 EDNRAP25101 427 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 MXD1Q05195 221 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 DSG2Q14126 1118 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 C3P1Q6ZMU1 363 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ARPC2O15144 300 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ENDOUP21128 410 aaKnown RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 IDH3AP50213 366 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 ERVK-8P63133 956 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 FOXK1P85037 733 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 DUOXA1Q1HG43 343 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 PLEKHN1Q494U1 663 aaPredicted RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 ANKRD26P1Q6NSI1 321 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 BORAQ6PGQ7 559 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 OR10A4Q9H209 315 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 LRRC4CQ9HCJ2 640 aa9.1□□□□□ -0.95
CUX1-201ENST00000292535 POLR3BQ9NW08 1133 aaPredicted RBP9.1□□□□□ -0.95
CUX1-201ENST00000292535 PIKFYVEQ9Y2I7 2098 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms