RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 SPRTNQ9H040 489 aaPredicted RBP12.25□□□□□ -0.45
SS18-202ENST00000269138 PCBD2Q9H0N5 130 aa12.25□□□□□ -0.45
SS18-202ENST00000269138 CCDC86Q9H6F5 360 aaKnown RBP12.25□□□□□ -0.45
SS18-202ENST00000269138 SYNPO2LQ9H987 977 aa12.25□□□□□ -0.45
SS18-202ENST00000269138 CPSF2Q9P2I0 782 aaKnown RBP12.25□□□□□ -0.45
SS18-202ENST00000269138 XPR1Q9UBH6 696 aa12.25□□□□□ -0.45
SS18-202ENST00000269138 RARRES3Q9UL19 164 aa12.25□□□□□ -0.45
SS18-202ENST00000269138 PCDHGA7Q9Y5G6 932 aa12.25□□□□□ -0.45
SS18-202ENST00000269138 PCDHGA3Q9Y5H0 932 aa12.25□□□□□ -0.45
SS18-202ENST00000269138 LRRC14BA6NHZ5 514 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 TK2O00142 265 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 TLX3O43711 291 aaPredicted RBP12.24□□□□□ -0.45
SS18-202ENST00000269138 WDR47O94967 919 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 RBP1P09455 135 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 ZNF28P17035 718 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 GGT5P36269 586 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 RAB15P59190 212 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 IL11RAQ14626 422 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 PFKFB4Q16877 469 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 KRT71Q3SY84 523 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 CATSPEREQ5SY80 951 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 CEACAM20Q6UY09 585 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 ADCK2Q7Z695 626 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 C17orf64Q86WR6 236 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 KLHDC8AQ8IYD2 350 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 C4orf33Q8N1A6 199 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 TCAIMQ8N3R3 496 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 RIBC1Q8N443 379 aaPredicted RBP12.24□□□□□ -0.45
SS18-202ENST00000269138 HNRNPLLQ8WVV9 542 aaKnown RBP12.24□□□□□ -0.45
SS18-202ENST00000269138 NEIL2Q969S2 332 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 ZNF578Q96N58 590 aaPredicted RBP12.24□□□□□ -0.45
SS18-202ENST00000269138 MRPL57Q9BQC6 102 aaKnown RBP12.24□□□□□ -0.45
SS18-202ENST00000269138 HAUS8Q9BT25 410 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 C12orf65Q9H3J6 166 aaKnown RBP12.24□□□□□ -0.45
SS18-202ENST00000269138 THSD1Q9NS62 852 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 PILRAQ9UKJ1 303 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 SNX7Q9UNH6 387 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 PLCL2Q9UPR0 1127 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 FRYQ5TBA9 3013 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 ADAMTS20P59510 1910 aa12.24□□□□□ -0.45
SS18-202ENST00000269138 LOC105369274A0A096LPK9 316 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 LOC102723532A0A0G2JNH3 316 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 A0A0J9YVX5 310 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 CCDC189A1A4V9 331 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 SYCE1LA8MT33 242 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 HAT1O14929 419 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 KLK8O60259 260 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 STK16O75716 305 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 MSL3P1P0C860 447 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 GFAPP14136 432 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 KRT4P19013 534 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 ERVPABLB-1P60509 514 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 CSNK1G2P78368 415 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 MEF2AQ02078 507 aaPredicted RBP12.23□□□□□ -0.45
SS18-202ENST00000269138 CEP85LQ5SZL2 805 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 TMEM164Q5U3C3 297 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 FRMPD2BQ6IN97 320 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 TRABD2AQ86V40 505 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 PPP1R3BQ86XI6 285 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 OR4N4Q8N0Y3 316 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 ASPSCR1Q9BZE9 553 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 CD244Q9BZW8 370 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 SPRY4Q9C004 299 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 MRPL46Q9H2W6 279 aaKnown RBP12.23□□□□□ -0.45
SS18-202ENST00000269138 TMEM184CQ9NVA4 438 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 DKK4Q9UBT3 224 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 EMCNQ9ULC0 261 aa12.23□□□□□ -0.45
SS18-202ENST00000269138 CHD8Q9HCK8 2581 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 TEX51A0A1B0GUA7 166 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 H3BMH7 237 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 TAF4O00268 1085 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 CCNT2O60583 730 aaKnown RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 PRAMEF4O60810 478 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 KIAA0754O94854 1291 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 SIX3O95343 332 aaPredicted RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 NTRK1P04629 796 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 CREB1P16220 341 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 EPORP19235 508 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 ALDH18A1P54886 795 aaKnown RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 SLC18A2Q05940 514 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 SETDB1Q15047 1291 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 PCM1Q15154 2024 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.22□□□□□ -0.45
SS18-202ENST00000269138 PRAMEF9Q5VWM5 478 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 RNF44Q7L0R7 432 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 SRRM1Q8IYB3 904 aaKnown RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 CNPY4Q8N129 248 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 PTGR2Q8N8N7 351 aaPredicted RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 SNX31Q8N9S9 440 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 ZNF740Q8NDX6 193 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 ABHD11Q8NFV4 315 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 UBTD2Q8WUN7 234 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 SLC5A11Q8WWX8 675 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 N4BP2L2Q92802 583 aaPredicted RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 FGF11Q92914 225 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 PHF21BQ96EK2 531 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 NAF1Q96HR8 494 aaKnown RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 TEFMQ96QE5 360 aaKnown RBP12.22□□□□□ -0.45
SS18-202ENST00000269138 B3GNT4Q9C0J1 378 aa12.22□□□□□ -0.45
SS18-202ENST00000269138 SPNS1Q9H2V7 528 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms