RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 IYDQ6PHW0 289 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 C2orf73Q8N5S3 287 aaPredicted RBP13.61□□□□□ -0.23
SS18-201ENST00000269137 TSPEARQ8WU66 669 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 UBE2E3Q969T4 207 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 UTP4Q969X6 686 aaKnown RBP13.61□□□□□ -0.23
SS18-201ENST00000269137 CMTM7Q96FZ5 175 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 METTL2AQ96IZ6 378 aaKnown RBP13.61□□□□□ -0.23
SS18-201ENST00000269137 NRTNQ99748 197 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 C1orf50Q9BV19 199 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 SLC25A23Q9BV35 468 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 PELI2Q9HAT8 420 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 TM9SF3Q9HD45 589 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 SLC40A1Q9NP59 571 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 CCDC167Q9P0B6 97 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 TAAR2Q9P1P5 351 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 TAC3Q9UHF0 121 aa13.61□□□□□ -0.23
SS18-201ENST00000269137 EIF3LQ9Y262 564 aaKnown RBP13.61□□□□□ -0.23
SS18-201ENST00000269137 BDP1A6H8Y1 2624 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 OR5K4A6NMS3 321 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 KRT16P08779 473 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 ACPPP15309 386 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 MXRA7P84157 204 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 DMWDQ09019 674 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 SLBPQ14493 270 aaKnown RBP eCLIP13.6□□□□□ -0.23
SS18-201ENST00000269137 HIST2H2ACQ16777 129 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 IL23RQ5VWK5 629 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 HIST2H2AA3Q6FI13 130 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 GK5Q6ZS86 529 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 FAM129CQ86XR2 697 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 OR9I1Q8NGQ6 314 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 CXorf40BQ96DE9 158 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 PITHD1Q9GZP4 211 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 MMADHCQ9H3L0 296 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 EFCAB1Q9HAE3 211 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 PRMT8Q9NR22 394 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 OR6C2Q9NZP2 312 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 TMED5Q9Y3A6 229 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 ZDBF2Q9HCK1 2354 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 SPAG17Q6Q759 2223 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 PRAMEF33A0A0G2JMD5 474 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 PIPSLA2A3N6 862 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 FOXE1O00358 373 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 PRICKLE3O43900 615 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 SEC22BO75396 215 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 SLC22A3O75751 556 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 CSF2P04141 144 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 CDH1P12830 882 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 CTSEP14091 401 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 NME1P15531 152 aaKnown RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 XRCC1P18887 633 aaPredicted RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 MAOBP27338 520 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 SHMT2P34897 504 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 RPL38P63173 70 aaKnown RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 PRDX1Q06830 199 aaKnown RBP13.6□□□□□ -0.23
SS18-201ENST00000269137 CUL3Q13618 768 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 TCEA2Q15560 299 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 ZNF542PQ5EBM4 170 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 LONP2Q86WA8 852 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 KYQ8NBH2 561 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 OR4K1Q8NGD4 311 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 HUS1BQ8NHY5 278 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 ACAT2Q9BWD1 397 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 XKR8Q9H6D3 395 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 VPS29Q9UBQ0 182 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 PPT2Q9UMR5 302 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 PCDHB11Q9Y5F2 797 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 HEATR5BQ9P2D3 2071 aa13.6□□□□□ -0.23
SS18-201ENST00000269137 TDRD6O60522 2096 aaKnown RBP13.59□□□□□ -0.23
SS18-201ENST00000269137 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 KIR2DS5A0A0G2JLQ3 304 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 A0A0G2JNG1 304 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 KIR2DS3K7RE56 304 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 AIM2O14862 343 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 ANKRD28O15084 1053 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 G6PDP11413 515 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 TDGF1P13385 188 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 JUNDP17535 347 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 ITGAXP20702 1163 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 CXCR2P25025 360 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 HNRNPH1P31943 449 aaKnown RBP13.59□□□□□ -0.23
SS18-201ENST00000269137 PIK3CBP42338 1070 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 CCR8P51685 355 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 SLC25A3Q00325 362 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 KIR2DS5Q14953 304 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 WDR45BQ5MNZ6 344 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 CACHD1Q5VU97 1274 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 ICE2Q659A1 982 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 BLOC1S3Q6QNY0 202 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 CYP20A1Q6UW02 462 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 TAF8Q7Z7C8 310 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 TMEFF1Q8IYR6 380 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 KRT78Q8N1N4 520 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 ARHGAP24Q8N264 748 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 OR2A1Q8NGT9 310 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 LCN9Q8WX39 176 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 RCN3Q96D15 328 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 FCRL1Q96LA6 429 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 MTERF1Q99551 399 aaKnown RBP13.59□□□□□ -0.23
SS18-201ENST00000269137 TWSG1Q9GZX9 223 aa13.59□□□□□ -0.23
SS18-201ENST00000269137 MIR1-1HGQ9H1L0 117 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms