RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 ZNF232Q9UNY5 417 aa11.26□□□□□ -0.61
VPS33A-201ENST00000267199 GUCY1B2O75343 617 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 NME6O75414 186 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 SOX14O95416 240 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 VIPP01282 170 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 EPOP01588 193 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CD1DP15813 335 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CSTF2P33240 577 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RPL3P39023 403 aaKnown RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 STARP49675 285 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 MAPK12P53778 367 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 GNG2P59768 71 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CSTF1Q05048 431 aaKnown RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CLCA4Q14CN2 919 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CYP27C1Q4G0S4 372 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ZNF613Q6PF04 617 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 BORAQ6PGQ7 559 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RD3Q7Z3Z2 195 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ZNF280BQ86YH2 543 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 PHC2Q8IXK0 858 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 FAM20CQ8IXL6 584 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 MINDY1Q8N5J2 469 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ZNF557Q8N988 423 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 OR5AK3PQ8NH89 298 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RASSF5Q8WWW0 418 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 IGSF8Q969P0 613 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ITPKCQ96DU7 683 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 QRFPRQ96P65 431 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 POLR2J3Q9H1A7 115 aaKnown RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RHBGQ9H310 441 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CLCA3PQ9Y6N3 262 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 LOC730098B7Z3J9 87 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 H3BM21 787 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ANXA8P13928 327 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 NTSP30990 170 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 NUP62P37198 522 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CSKP41240 450 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 PRKCZQ05513 592 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 BLOC1S3Q6QNY0 202 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RANBP10Q6VN20 620 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 PLD4Q96BZ4 506 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 DSN1Q9H410 356 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 BAIAP2Q9UQB8 552 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 URB1O60287 2271 aaKnown RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CROCCQ5TZA2 2017 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 SAP18O00422 153 aaKnown RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RPN2P04844 631 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 TARDBPQ13148 414 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 IDNKQ5T6J7 187 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 LCN8Q6JVE9 175 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 MAVSQ7Z434 540 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CYP2U1Q7Z449 544 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 SNX20Q7Z614 316 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 NPAS4Q8IUM7 802 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 NDNFQ8TB73 568 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ANKRD49Q8WVL7 239 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 FRMD6Q96NE9 622 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 RAD18Q9NS91 495 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 COQ3Q9NZJ6 369 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 FZD4Q9ULV1 537 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ITM2BQ9Y287 266 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 N6AMT1Q9Y5N5 214 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CHURC1-FNTBB4DL54 471 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 DYRK3O43781 588 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ASMTP46597 345 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ZNF267Q14586 743 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 CAPN13Q6MZZ7 669 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 TUBA3EQ6PEY2 450 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 FAM180AQ6UWF9 173 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 PEX5LQ8IYB4 626 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 COLGALT2Q8IYK4 626 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 SUSD6Q92537 303 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 WACQ9BTA9 647 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 PDCD10Q9BUL8 212 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 ZNF717Q9BY31 904 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-201ENST00000267199 SLITRK2Q9H156 845 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 TAS2R9Q9NYW1 312 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 Q9Y3F1 56 aa11.25□□□□□ -0.61
VPS33A-201ENST00000267199 TBC1D3BA6NDS4 549 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 OR1I1O60431 355 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 LCKP06239 509 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 GSTM2P28161 218 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 CAPZA2P47755 286 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 ST3GAL4Q11206 333 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 SYVN1Q86TM6 617 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 KRTCAP2Q8N6L1 136 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 OR13J1Q8NGT2 312 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 EXOSC8Q96B26 276 aaKnown RBP11.24□□□□□ -0.61
VPS33A-201ENST00000267199 LRCH3Q96II8 777 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 COL21A1Q96P44 957 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 RANBP9Q96S59 729 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 BEX1Q9HBH7 125 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 RHCGQ9UBD6 479 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 SMCHD1A6NHR9 2005 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 NUMA1Q14980 2115 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 PPP6CO00743 305 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 CCNDBP1O95273 360 aa11.24□□□□□ -0.61
VPS33A-201ENST00000267199 S100A9P06702 114 aaKnown RBP11.24□□□□□ -0.61
VPS33A-201ENST00000267199 SMIM18P0DKX4 95 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms