RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PAGE3Q5JUK9 113 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 NEK5Q6P3R8 708 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 CYHR1Q6ZMK1 362 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 SLCO6A1Q86UG4 719 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 OR2T11Q8NH01 316 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 SELENOMQ8WWX9 145 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 FIG4Q92562 907 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 JADE3Q92613 823 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 DLG3Q92796 817 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 RAB7BQ96AH8 199 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 MIEF2Q96C03 454 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 VPS50Q96JG6 964 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 RNF145Q96MT1 663 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 MTERF1Q99551 399 aaKnown RBP8.4□□□□□ -1.06
VPS4B-201ENST00000238497 PRPF18Q99633 342 aaKnown RBP8.4□□□□□ -1.06
VPS4B-201ENST00000238497 RIOK2Q9BVS4 552 aaKnown RBP8.4□□□□□ -1.06
VPS4B-201ENST00000238497 EBPLQ9BY08 206 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 TRIM54Q9BYV2 358 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 PKD2L2Q9NZM6 624 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 PCTPQ9UKL6 214 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 PSMD13Q9UNM6 376 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 RPL26L1Q9UNX3 145 aaKnown RBP8.4□□□□□ -1.06
VPS4B-201ENST00000238497 SLC22A14Q9Y267 594 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 DHRS7Q9Y394 339 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.4□□□□□ -1.07
VPS4B-201ENST00000238497 ESRRBO95718 433 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 MLYCDO95822 493 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 CLIC3O95833 236 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 EPB42P16452 691 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 MSH3P20585 1137 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 LHCGRP22888 699 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 RPL10P27635 214 aaKnown RBP8.4□□□□□ -1.07
VPS4B-201ENST00000238497 EPHA8P29322 1005 aaPredicted RBP8.4□□□□□ -1.07
VPS4B-201ENST00000238497 TYSND1Q2T9J0 566 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 FAM91A1Q658Y4 838 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 CRTC3Q6UUV7 619 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 ZBTB49Q6ZSB9 765 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 ADAMTSL2Q86TH1 951 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 TRAPPC5Q8IUR0 188 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 LMX1AQ8TE12 382 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 CYGBQ8WWM9 190 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 KCNJ9Q92806 393 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 AURKBQ96GD4 344 aaPredicted RBP8.4□□□□□ -1.07
VPS4B-201ENST00000238497 ELOVL6Q9H5J4 265 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 MAGEE1Q9HCI5 957 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 ZNF225Q9UK10 706 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 PCDHGB4Q9UN71 923 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 PCDHGB5Q9Y5G0 923 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 PKD1L2Q7Z442 2459 aa8.4□□□□□ -1.07
VPS4B-201ENST00000238497 CPED1A4D0V7 1026 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GNGT2O14610 69 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GBAP04062 536 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 LYNP07948 512 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 ELFN1P0C7U0 828 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 JUNDP17535 347 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 MAP4P27816 1152 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 POLR2JP52435 117 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 ELP6Q0PNE2 266 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 BLMHQ13867 455 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 FGL2Q14314 439 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 TTLL9Q3SXZ7 439 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 ZIK1Q3SY52 487 aaPredicted RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 C6orf136Q5SQH8 315 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 HID1Q8IV36 788 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 VRK3Q8IV63 474 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 LILRA2Q8N149 483 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 OXR1Q8N573 874 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 KRTCAP2Q8N6L1 136 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GPR156Q8NFN8 814 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GPR150Q8NGU9 434 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 FBXO30Q8TB52 745 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 PNPT1Q8TCS8 783 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 KCTD14Q9BQ13 255 aaPredicted RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 EFHD1Q9BUP0 239 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 ABCG4Q9H172 646 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 FAM83DQ9H4H8 585 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 COQ10BQ9H8M1 238 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GID8Q9NWU2 228 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 UCKL1Q9NWZ5 548 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 PRPF19Q9UMS4 504 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 CFAP20Q9Y6A4 193 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 PIKFYVEQ9Y2I7 2098 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 ABCB1P08183 1280 aaPredicted RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 OR56A5P0C7T3 313 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 UROSP10746 265 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 MRPS35P82673 323 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 UGT3A2Q3SY77 523 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 PRRT3Q5FWE3 981 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 SAMD4BQ5PRF9 694 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GPRC6AQ5T6X5 926 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 UNQ6494/PRO21346Q6UXR6 183 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 GCNT7Q6ZNI0 430 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 NXPE1Q8N323 547 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 CPSF7Q8N684 471 aaKnown RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 L3HYPDHQ96EM0 354 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 ZBTB18Q99592 522 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 DPY30Q9C005 99 aa8.39□□□□□ -1.07
VPS4B-201ENST00000238497 SOX17Q9H6I2 414 aaPredicted RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 PNMA8BQ9ULN7 279 aaPredicted RBP8.39□□□□□ -1.07
VPS4B-201ENST00000238497 AP4B1Q9Y6B7 739 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms