RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 HNRNPA0Q13151 305 aaKnown RBP14.27□□□□□ -0.13
PTPRA-201ENST00000216877 PTGR1Q14914 329 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 OR2T5Q6IEZ7 315 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 MSANTD2Q6P1R3 559 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 KDELC1Q6UW63 502 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 TEX261Q6UWH6 196 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 LCLAT1Q6UWP7 414 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 VTCN1Q7Z7D3 282 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 DPP9Q86TI2 863 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 ISCA2Q86U28 154 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 GDPD1Q8N9F7 314 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 OR2T29Q8NH02 315 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 RBPMSQ93062 196 aaKnown RBP14.27□□□□□ -0.13
PTPRA-201ENST00000216877 GIMAP5Q96F15 307 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 MCCC1Q96RQ3 725 aaPredicted RBP14.27□□□□□ -0.13
PTPRA-201ENST00000216877 SMAD5Q99717 465 aaKnown RBP14.27□□□□□ -0.13
PTPRA-201ENST00000216877 PAK6Q9NQU5 681 aaPredicted RBP14.27□□□□□ -0.13
PTPRA-201ENST00000216877 CMAHPQ9Y471 501 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 ACTL7AQ9Y615 435 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 U3KQ87 197 aa14.27□□□□□ -0.13
PTPRA-201ENST00000216877 ALAS2P22557 587 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 CDKN2DP55273 166 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 SCRN3Q0VDG4 424 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 NPRL3Q12980 569 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 RNASE12Q5GAN4 147 aaKnown RBP14.26□□□□□ -0.13
PTPRA-201ENST00000216877 C10orf62Q5T681 223 aaPredicted RBP14.26□□□□□ -0.13
PTPRA-201ENST00000216877 SPATA19Q7Z5L4 167 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 GPR65Q8IYL9 337 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 NLGN2Q8NFZ4 835 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 SH3RF2Q8TEC5 729 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 ZNF416Q9BWM5 594 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 IKZF5Q9H5V7 419 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 POLMQ9NP87 494 aaPredicted RBP14.26□□□□□ -0.13
PTPRA-201ENST00000216877 OR1I1O60431 355 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 TRAPPC2P0DI81 140 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 TRAPPC2BP0DI82 140 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 NNMTP40261 264 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 CAPZA2P47755 286 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 PER3P56645 1201 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 DEFA5Q01523 94 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 ZNF484Q5JVG2 852 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 LAMTOR1Q6IAA8 161 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 PROKR1Q8TCW9 393 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 GGHQ92820 318 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 NARS2Q96I59 477 aaKnown RBP14.26□□□□□ -0.13
PTPRA-201ENST00000216877 SENP8Q96LD8 212 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 UBXN10Q96LJ8 280 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 STYXL1Q9Y6J8 313 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 PPM1BO75688 479 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 CCNCP24863 283 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 MAGEA11P43364 429 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 PUDPQ08623 228 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 GRK1Q15835 563 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 AP5B1Q2VPB7 878 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.26□□□□□ -0.13
PTPRA-201ENST00000216877 C6orf136Q5SQH8 315 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 SAXO2Q658L1 398 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 TSPYL5Q86VY4 417 aaPredicted RBP14.26□□□□□ -0.13
PTPRA-201ENST00000216877 DNAJC5GQ8N7S2 189 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 TMEM209Q96SK2 561 aa14.26□□□□□ -0.13
PTPRA-201ENST00000216877 ICAM1P05362 532 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 JUNDP17535 347 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 CAV3P56539 151 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 OLR1P78380 273 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 ADIGQ0VDE8 80 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 CAMK2GQ13555 558 aaPredicted RBP14.25□□□□□ -0.13
PTPRA-201ENST00000216877 FCN2Q15485 313 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 ANGPTL8Q6UXH0 198 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 FANK1Q8TC84 345 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 DPY30Q9C005 99 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 UBQLN2Q9UHD9 624 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 KLHL21Q9UJP4 597 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 COPS3Q9UNS2 423 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 CHURC1-FNTBB4DL54 471 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 PAHP00439 452 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 CSF3P09919 207 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 PCDH1Q08174 1060 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 LCP2Q13094 533 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 LRRC32Q14392 662 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 PROX2Q3B8N5 592 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 TOR1AIP1Q5JTV8 583 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 KRT74Q7RTS7 529 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 TCTE3Q8IZS6 198 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 KHSRPQ92945 711 aaKnown RBP eCLIP14.25□□□□□ -0.131e-7■■■■□ 24.1
PTPRA-201ENST00000216877 LINC00052Q96N35 136 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 COL21A1Q96P44 957 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 PXMP2Q9NR77 195 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 MLXQ9UH92 298 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 ZNF175Q9Y473 711 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 IFNA14P01570 189 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 PIRTP0C851 137 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 PSMA1P25786 263 aaKnown RBP14.25□□□□□ -0.13
PTPRA-201ENST00000216877 RRAS2P62070 204 aaPredicted RBP14.25□□□□□ -0.13
PTPRA-201ENST00000216877 EXOSC2Q13868 293 aaKnown RBP14.25□□□□□ -0.13
PTPRA-201ENST00000216877 KCTD2Q14681 263 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 BCL2L15Q5TBC7 163 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 CPZQ66K79 652 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 ENTHD1Q8IYW4 607 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 TAGAPQ8N103 731 aa14.25□□□□□ -0.13
PTPRA-201ENST00000216877 Q8N402 240 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms