RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MGLLQ99685 303 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 EBF4Q9BQW3 602 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF350Q9GZX5 532 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 MROH8Q9H579 483 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 RERGLQ9H628 205 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ARL15Q9NXU5 204 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 COMMD3Q9UBI1 195 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SPIN1Q9Y657 262 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 hCG_1807616A0A1W2PRN6 198 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 MICAL2O94851 1124 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CLDN9O95484 217 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PROS1P07225 676 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LPOP22079 712 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 RBMS1P29558 406 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CCR10P46092 362 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ERFEQ4G0M1 354 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FBXO47Q5MNV8 452 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 KIAA1324Q6UXG2 1013 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 HIST2H3AQ71DI3 136 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DET1Q7L5Y6 550 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 RHEBL1Q8TAI7 183 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 HAS1Q92839 578 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 P2RY11Q96G91 374 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR4K3Q96R72 315 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 HSD17B14Q9BPX1 270 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DHRS4Q9BTZ2 278 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GSX2Q9BZM3 304 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ABCG5Q9H222 651 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NT5MQ9NPB1 228 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 IMP3Q9NV31 184 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NKIRAS2Q9NYR9 191 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 U3KQV3 271 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TCAF2A6NFQ2 919 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PSMD10O75832 226 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SMIM6P0DI80 62 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SCNN1GP51170 649 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PEA15Q15121 130 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PTCHD3Q3KNS1 767 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 AKR1C8PQ5T2L2 129 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SUSD4Q5VX71 490 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CYP20A1Q6UW02 462 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GLT6D1Q7Z4J2 308 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SNX20Q7Z614 316 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SPRED1Q7Z699 444 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TMPRSS11BQ86T26 416 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CLIP4Q8N3C7 705 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NAT16Q8N8M0 369 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CNOT9Q92600 299 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FBXL20Q96IG2 436 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 KCNS3Q9BQ31 491 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CACNG6Q9BXT2 260 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ARL6Q9H0F7 186 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 MUC3BQ9H195 1237 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 WDR6Q9NNW5 1121 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LRFN2Q9ULH4 789 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ARHGEF28Q8N1W1 1705 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 F5H423 210 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PRODHO43272 600 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LGR5O75473 907 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SULT1C4O75897 302 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 KAT7O95251 611 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CSF3P09919 207 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DUSP7Q16829 419 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SMIM15Q7Z3B0 74 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TCTE3Q8IZS6 198 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NRG4Q8WWG1 115 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 MOAP1Q96BY2 351 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PPP1R16BQ96T49 567 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DPCDQ9BVM2 203 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SCPEP1Q9HB40 452 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GLOD4Q9HC38 313 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 NMRK2Q9NPI5 230 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ABCC13Q9NSE7 274 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CLEC4AQ9UMR7 237 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 PADI2Q9Y2J8 665 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 STK16O75716 305 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 HNRNPLP14866 589 aaKnown RBP eCLIP4.56□□□□□ -1.688e-7■■■□□ 16.4
SCN1A-220ENST00000641603 MAOAP21397 527 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DSG3P32926 999 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 TUBP50607 506 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 DPYSL2Q16555 572 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CARTPTQ16568 116 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SLC9B1Q4ZJI4 515 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LRRC70Q7Z2Q7 622 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CMC1Q7Z7K0 106 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 FAM124AQ86V42 546 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZSCAN1Q8NBB4 408 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 CAMKVQ8NCB2 501 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 OR4C6Q8NH72 309 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SCARB1Q8WTV0 552 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2H4Q92759 462 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ACSF2Q96CM8 615 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LGMNQ99538 433 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF471Q9BX82 626 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ABCB9Q9NP78 766 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 SLAMF7Q9NQ25 335 aa4.56□□□□□ -1.68
SCN1A-220ENST00000641603 MEPEQ9NQ76 525 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 LYARQ9NX58 379 aaKnown RBP4.56□□□□□ -1.68
SCN1A-220ENST00000641603 ABCD2Q9UBJ2 740 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 415.9 ms