RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	NXPE4	Q6UWF7	544 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	CHSY3	Q70JA7	882 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	TRIM46	Q7Z4K8	759 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	CLNK	Q7Z7G1	428 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC9B2	Q86UD5	537 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	AMIGO1	Q86WK6	493 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	C17orf64	Q86WR6	236 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	MYLK4	Q86YV6	388 aa	Predicted RBP	11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	RBM12B	Q8IXT5	1001 aa	Known RBP	11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	NAGS	Q8N159	534 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	SFRP1	Q8N474	314 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	LINC01555	Q8NAE3	123 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	AVL9	Q8NBF6	648 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	LMX1A	Q8TE12	382 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	ZDHHC1	Q8WTX9	485 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC5A11	Q8WWX8	675 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	LCN9	Q8WX39	176 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	USP7	Q93009	1102 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	TUBGCP3	Q96CW5	907 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	ERP27	Q96DN0	273 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	TUBB6	Q9BUF5	446 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	EFCAB11	Q9BUY7	163 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	NMUR2	Q9GZQ4	415 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	XKR8	Q9H6D3	395 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	CAAP1	Q9H8G2	361 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	AKTIP	Q9H8T0	292 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	PELI2	Q9HAT8	420 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC40A1	Q9NP59	571 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	POT1	Q9NUX5	634 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	MRGBP	Q9NV56	204 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	OR6C2	Q9NZP2	312 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	CPNE7	Q9UBL6	633 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	ZNF490	Q9ULM2	529 aa	Predicted RBP	11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	DOLK	Q9UPQ8	538 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	PCDHB11	Q9Y5F2	797 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	PCDHGA11	Q9Y5H2	935 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	KMT2E	Q8IZD2	1858 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	ADAMTS9	Q9P2N4	1935 aa		11.37	□□□□□ -0.59
CLN6-223	ENST00000637823	MDC1	Q14676	2089 aa	Known RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ATP6AP2	A0A1C7CYW4	349 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823		A0A1W2PPV9	198 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	LMO7DN	F2Z398	122 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	UBD	O15205	165 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	YY2	O15391	372 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	RGS14	O43566	566 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	PRICKLE3	O43900	615 aa	Predicted RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ATP6AP2	O75787	350 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	UBOX5	O94941	541 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ANXA6	P08133	673 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	LBP	P18428	481 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ADSL	P30566	484 aa	Predicted RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	HOXD12	P35452	270 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	RXRG	P48443	463 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	HTR6	P50406	440 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	KRT72	Q14CN4	511 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SMU1	Q2TAY7	513 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	PAGE2B	Q5JRK9	111 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	TCHHL1	Q5QJ38	904 aa	Predicted RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	C10orf62	Q5T681	223 aa	Predicted RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	PEAR1	Q5VY43	1037 aa	Predicted RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	FRG2	Q64ET8	278 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SCIMP	Q6UWF3	145 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SPATA19	Q7Z5L4	167 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	RABEPK	Q7Z6M1	372 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SYT12	Q8IV01	421 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	CPSF7	Q8N684	471 aa	Known RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	LMNTD1	Q8N9Z9	388 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ZBTB44	Q8NCP5	570 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	OR4E2	Q8NGC2	313 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC37A2	Q8TED4	501 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC22A18	Q96BI1	424 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	REPS1	Q96D71	796 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	FRG2B	Q96QU4	278 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	NRTN	Q99748	197 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	CCDC106	Q9BWC9	280 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SRMS	Q9H3Y6	488 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ELOVL6	Q9H5J4	265 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	TMEM74B	Q9NUR3	256 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	SNX11	Q9Y5W9	270 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	PTGDR2	Q9Y5Y4	395 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	CSNK1G3	Q9Y6M4	447 aa		11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	GOLGA4	Q13439	2230 aa	Known RBP	11.36	□□□□□ -0.59
CLN6-223	ENST00000637823	ATXN2	Q99700	1313 aa	Known RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CABIN1	Q9Y6J0	2220 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	FAM221B	A6H8Z2	402 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CAPN14	A8MX76	684 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	SLC22A2	O15244	555 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PIAS2	O75928	621 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ATP5H	O75947	161 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CCNDBP1	O95273	360 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PDYN	P01213	254 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PRR35	P0CG20	571 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CDH1	P12830	882 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CD22	P20273	847 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	HRH2	P25021	359 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	CXCR2	P25025	360 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	ABAT	P80404	500 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	BNC1	Q01954	994 aa		11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	PRDX1	Q06830	199 aa	Known RBP	11.35	□□□□□ -0.59
CLN6-223	ENST00000637823	GPR18	Q14330	331 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms