RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NME7Q9Y5B8 376 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 SELENOKQ9Y6D0 94 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 R4GN57 208 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 LNP1A1A4G5 178 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 ANKUB1A6NFN9 424 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 NPIPB9F8W1W9 429 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 TMEM63AO94886 807 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 OR2T7P0C7T2 308 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 AOC1P19801 751 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 DNA2P51530 1060 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 ARSEP51690 589 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 SIRPAP78324 504 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 MYL7Q01449 175 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 RUNX3Q13761 415 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 PTPN14Q15678 1187 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 EXT1Q16394 746 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 CA9Q16790 459 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 ATAD3CQ5T2N8 411 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 C11orf63Q6NUN7 778 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 TMTC3Q6ZXV5 915 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 IKBIPQ70UQ0 350 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 ZC3H3Q8IXZ2 948 aaKnown RBP2.1□□□□□ -2.07
SCN1A-208ENST00000625916 FBXO39Q8N4B4 442 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 OR10G7Q8NGN6 311 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 AGAP11Q8TF27 550 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 SSMEM1Q8WWF3 244 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 FAM20AQ96MK3 541 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 TEX13BQ9BXU2 312 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 SPATC1LQ9H0A9 340 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 NAALAD2Q9Y3Q0 740 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 FAM205AQ6ZU69 1335 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF541Q9H0D2 1346 aa2.1□□□□□ -2.07
SCN1A-208ENST00000625916 OR2C1O95371 312 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 SMIM18P0DKX4 95 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 PCP11498 1178 aaKnown RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 ATP4BP51164 291 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 FKBP3Q00688 224 aaKnown RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 SGCGQ13326 291 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF146Q15072 292 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 ZRSR2Q15696 482 aaKnown RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF79Q15937 498 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 C3P1Q6ZMU1 363 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 PRR22Q8IZ63 422 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 TDRD5Q8NAT2 981 aaKnown RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 OR7A2PQ8NGA2 310 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 OR52B6Q8NGF0 335 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 MRAPQ8TCY5 172 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 LRRC59Q96AG4 307 aaKnown RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 THOC1Q96FV9 657 aaKnown RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 SLC39A8Q9C0K1 460 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 PDFQ9HBH1 243 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF581Q9P0T4 197 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.09□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF148Q9UQR1 794 aa2.09□□□□□ -2.07
SCN1A-208ENST00000625916 MEIS2O14770 477 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 GJA1P17302 382 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 ELAVL4P26378 380 aaKnown RBP2.08□□□□□ -2.08
SCN1A-208ENST00000625916 ACSL1P33121 698 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 ARL3P36405 182 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 OR3A2P47893 321 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 UGT3A2Q3SY77 523 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 C2orf83Q53S99 150 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 SYT14P1Q58G82 188 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 AGAP7PQ5VUJ5 663 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 LGI2Q8N0V4 545 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 WDTC1Q8N5D0 677 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 SCFD2Q8WU76 684 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 PIGBQ92521 554 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 BADQ92934 168 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 SEC62Q99442 399 aaKnown RBP2.08□□□□□ -2.08
SCN1A-208ENST00000625916 SDHCQ99643 169 aaPredicted RBP2.08□□□□□ -2.08
SCN1A-208ENST00000625916 IRAK4Q9NWZ3 460 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 TMED3Q9Y3Q3 217 aa2.08□□□□□ -2.08
SCN1A-208ENST00000625916 TDRD6O60522 2096 aaKnown RBP2.08□□□□□ -2.08
SCN1A-208ENST00000625916 CDRT15L2A8MXV6 281 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 E9PAM4 449 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TRAFD1O14545 582 aaPredicted RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 CDX4O14627 284 aaPredicted RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 ARPC2O15144 300 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 SURF4O15260 269 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 ERAL1O75616 437 aaKnown RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 KRT33AO76009 404 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 NXPH4O95158 308 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 PPIAP62937 165 aaKnown RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 CXCL9Q07325 125 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 KLC1Q07866 573 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TRIM29Q14134 588 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 DHX8Q14562 1220 aaKnown RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 PHKG1Q16816 387 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 Q1RN00 199 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 NHLRC1Q6VVB1 395 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 FCRLAQ7L513 359 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 ARHGAP22Q7Z5H3 698 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TMPRSS11BQ86T26 416 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 AACSQ86V21 672 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TMEM173Q86WV6 379 aaPredicted RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 MMD2Q8IY49 270 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 SMAP1Q8IYB5 467 aaPredicted RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 MAML2Q8IZL2 1156 aaPredicted RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 C4orf32Q8N8J7 132 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms