RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 MMP28Q9H239 520 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 POMKQ9H5K3 350 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 LYARQ9NX58 379 aaKnown RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SLC45A1Q9Y2W3 748 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 NME7Q9Y5B8 376 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 PDCD11Q14690 1871 aaKnown RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 C19orf81C9J6K1 198 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 PLA2G6O60733 806 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ADAM11O75078 769 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SEC14L2O76054 403 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 LTA4HP09960 611 aaKnown RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SMIM18P0DKX4 95 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ANXA8P13928 327 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 KCNJ5P48544 419 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 PRELPP51888 382 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 TEKQ02763 1124 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 TRAM2Q15035 370 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 KIAA1161Q6NSJ0 714 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MFSD8Q8NHS3 518 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 WDR55Q9H6Y2 383 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 C1orf109Q9NX04 203 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF70Q9UC06 446 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SLC27A5Q9Y2P5 690 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SLC25A36Q96CQ1 311 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MUS81Q96NY9 551 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ZDHHC4Q9NPG8 344 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ENTPD4Q9Y227 616 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 PCDHGB1Q9Y5G3 927 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MYO16Q9Y6X6 1858 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 VPS26AO75436 327 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 CSH1P0DML2 217 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 CSH2P0DML3 217 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ARSFP54793 590 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 GHRHRQ02643 423 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 PTGES3Q15185 160 aaKnown RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MEP1AQ16819 746 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 C14orf28Q4W4Y0 310 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 TEX30Q5JUR7 227 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MUL1Q969V5 352 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 LIN37Q96GY3 246 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 C2orf40Q9H1Z8 148 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SLC28A3Q9HAS3 691 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 SP110Q9HB58 689 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ATP13A1Q9HD20 1204 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ARHGEF4Q9NR80 690 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 FBXL4Q9UKA2 621 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MN1Q10571 1320 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 F5H0A9 414 aaPredicted RBP4.84□□□□□ -1.63
VPS13D-213ENST00000613099 MAP2K4P45985 399 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 CSHL1Q14406 222 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 GK5Q6ZS86 529 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 ILDR2Q71H61 639 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 BRINP3Q76B58 766 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 HTR3CQ8WXA8 447 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 NIF3L1Q9GZT8 377 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 PCDHAC1Q9H158 963 aa4.84□□□□□ -1.63
VPS13D-213ENST00000613099 A0A0A0MRY4 1105 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 OGTO15294 1046 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 KIAA0513O60268 411 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 BRINP1O60477 761 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 DARSP14868 501 aaKnown RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 PFKLP17858 780 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 MPSTP25325 297 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 GTF2E2P29084 291 aaKnown RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 NUMA1Q14980 2115 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 SDR42E1Q8WUS8 393 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 RAB3CQ96E17 227 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 PHF21BQ96EK2 531 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 PIWIL1Q96J94 861 aaKnown RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 SPATA13Q96N96 652 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 TRIM2Q9C040 744 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 GGA3Q9NZ52 723 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 NARFQ9UHQ1 456 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF639Q9UID6 485 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 CDRT1O95170 752 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 HIST1H2AGP0C0S8 130 aaPredicted RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 ALAS1P13196 640 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 HIST1H2ADP20671 130 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 RPS27AP62979 156 aaKnown RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 UBA52P62987 128 aaKnown RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 RSU1Q15404 277 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 OR2T5Q6IEZ7 315 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 LRRC69Q6ZNQ3 347 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 DNAJC10Q8IXB1 793 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF454Q8N9F8 522 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF548Q8NEK5 533 aaPredicted RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 OR2T29Q8NH02 315 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 SMAP2Q8WU79 429 aaPredicted RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 HIST1H2AHQ96KK5 128 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 DCLRE1CQ96SD1 692 aaKnown RBP4.84□□□□□ -1.64
VPS13D-213ENST00000613099 HIST1H2AJQ99878 128 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 H2AFJQ9BTM1 129 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 CRB3Q9BUF7 120 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 EXO5Q9H790 373 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 BCO1Q9HAY6 547 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 MGAT4CQ9UBM8 478 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 TEX13CA0A0J9YWL9 993 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 LRRN3E7EW58 273 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 EPHB6O15197 1021 aa4.84□□□□□ -1.64
VPS13D-213ENST00000613099 NFYAP23511 347 aaPredicted RBP4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms