RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ZNF749O43361 778 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 OR2B3O76000 313 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 HIST1H2AGP0C0S8 130 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 CCDC166P0CW27 439 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 STMN1P16949 149 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 HIST1H2ADP20671 130 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 RAB10P61026 200 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 PRDX1Q06830 199 aaKnown RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 NAE1Q13564 534 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 ZKSCAN8Q15776 578 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 PPP1R3AQ16821 1122 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 THEMIS2Q5TEJ8 643 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 MROH9Q5TGP6 573 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 LCN10Q6JVE6 187 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 INO80CQ6PI98 192 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 GPR135Q8IZ08 494 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 ZNF655Q8N720 491 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 CT55Q8WUE5 264 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 CLIP3Q96DZ5 547 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 MED8Q96G25 268 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 HIST1H2AHQ96KK5 128 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 RUFY1Q96T51 708 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 HIST1H2AJQ99878 128 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 H2AFJQ9BTM1 129 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 ACTR5Q9H9F9 607 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 GPN2Q9H9Y4 310 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 LHX9Q9NQ69 397 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 CCDC177Q9NQR7 707 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 CUEDC1Q9NWM3 386 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 IRAK4Q9NWZ3 460 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 CTNNAL1Q9UBT7 734 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 CROTQ9UKG9 612 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 PADI1Q9ULC6 663 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 SH2B3Q9UQQ2 575 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 PCDHB3Q9Y5E6 796 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 KLK4Q9Y5K2 254 aa14.6□□□□□ -0.07
LIG1-219ENST00000600055 MRPS18BQ9Y676 258 aaKnown RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 ANKRD11Q6UB99 2663 aaPredicted RBP14.6□□□□□ -0.07
LIG1-219ENST00000600055 LOC105369274A0A096LPK9 316 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 LOC102723532A0A0G2JNH3 316 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 A0A0J9YVX5 310 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 OR2A25A4D2G3 310 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 MT-ND3P03897 115 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 ENO2P09104 434 aaPredicted RBP14.59□□□□□ -0.07
LIG1-219ENST00000600055 CCNYL3P0C7X3 344 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 ATXN8OSP0DMR3 200 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 MYBL2P10244 700 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 DLSTP36957 453 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 AP1S2P56377 157 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 CYP4F2P78329 520 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 TSNQ15631 228 aaKnown RBP14.59□□□□□ -0.07
LIG1-219ENST00000600055 PRAMEF13Q5VWM6 474 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 FRMPD2BQ6IN97 320 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 FBXO42Q6P3S6 717 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 GPR155Q7Z3F1 870 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 PAQR7Q86WK9 346 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 OR4N4Q8N0Y3 316 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 ANKRD7Q92527 254 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 PYCR2Q96C36 320 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 FBXL8Q96CD0 374 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 PLCD4Q9BRC7 762 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 TRIM54Q9BYV2 358 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 DERL2Q9GZP9 239 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 SYNPO2LQ9H987 977 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 STARD5Q9NSY2 213 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 PCMTD2Q9NV79 361 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 NOVA2Q9UNW9 492 aaKnown RBP14.59□□□□□ -0.07
LIG1-219ENST00000600055 PCDHGA4Q9Y5G9 962 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 AHCTF1Q8WYP5 2266 aa14.59□□□□□ -0.07
LIG1-219ENST00000600055 PABPN1LA6NDY0 278 aaKnown RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 MEN1O00255 615 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 TERTO14746 1132 aaKnown RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 ZSCAN9O15535 394 aaPredicted RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 SNRNP200O75643 2136 aaKnown RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 CCNDBP1O95273 360 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 SLC35E2BP0CK96 405 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 CD1DP15813 335 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 TCN2P20062 427 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 RORAP35398 523 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 VSX2P58304 361 aaPredicted RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 DLG1Q12959 904 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 CSHL1Q14406 222 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 C18orf21Q32NC0 220 aaPredicted RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 PTCHD3Q3KNS1 767 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 ZC3H12BQ5HYM0 836 aaKnown RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 C1orf189Q5VU69 101 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 ZNF425Q6IV72 752 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 RAPH1Q70E73 1250 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 RNF44Q7L0R7 432 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 DSELQ8IZU8 1212 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 OR56A3Q8NH54 315 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 SLC44A1Q8WWI5 657 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 MR1Q95460 341 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 KIAA1143Q96AT1 154 aaPredicted RBP14.58□□□□□ -0.08
LIG1-219ENST00000600055 UBXN10Q96LJ8 280 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 SELENOSQ9BQE4 189 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 SGPP1Q9BX95 441 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 TXLNGYQ9BZA5 131 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 SLC7A5P2Q9GIP4 190 aa14.58□□□□□ -0.08
LIG1-219ENST00000600055 CHST8Q9H2A9 424 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms