RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CENPLQ8N0S6 344 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 ZUFSPQ96AP4 578 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 FBXL8Q96CD0 374 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 MRRFQ96E11 262 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 TSPAN17Q96FV3 270 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 OR4K3Q96R72 315 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 PAFAH2Q99487 392 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 ULBP3Q9BZM4 244 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 IGSF5Q9NSI5 407 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 CUEDC1Q9NWM3 386 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 TAC3Q9UHF0 121 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 OARD1Q9Y530 152 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 PCDHB3Q9Y5E6 796 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 CACNA1GO43497 2377 aa18.73■□□□□ 0.59
SHKBP1-221ENST00000599833 BOD1L1Q8NFC6 3051 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 LOC101059948A0A1B0GTJ6 334 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 CCDC166P0CW27 439 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 STAT5AP42229 794 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 VSNL1P62760 191 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 CDKL1Q00532 357 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 IRF9Q00978 393 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 MROH9Q5TGP6 573 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 ZNF385CQ66K41 422 aaPredicted RBP18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 FBXO42Q6P3S6 717 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 VASH2Q86V25 355 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 GALNT6Q8NCL4 622 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 SNRNP27Q8WVK2 155 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 HNRNPLLQ8WVV9 542 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 PLCD4Q9BRC7 762 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 DPH7Q9BTV6 452 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 SPRTNQ9H040 489 aaPredicted RBP18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 ATG10Q9H0Y0 220 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 PRORYQ9H606 182 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 SNX15Q9NRS6 342 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 ZNF180Q9UJW8 692 aa18.72■□□□□ 0.59
SHKBP1-221ENST00000599833 A0A087WUV0 522 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 ZNF839A8K0R7 811 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 SCRG1O75711 98 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 SLU7O95391 586 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 NTRK1P04629 796 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 C2P06681 752 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 F8A1P23610 371 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 RPA3P35244 121 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 GPS2Q13227 327 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 UAP1Q16222 522 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 FRMPD2BQ6IN97 320 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 LCN10Q6JVE6 187 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 CYB5D1Q6P9G0 228 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 C19orf48Q6RUI8 117 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 ISCA2Q86U28 154 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 KLHDC8AQ8IYD2 350 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 CACNA2D3Q8IZS8 1091 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 NLGN4XQ8N0W4 816 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 NLGN4YQ8NFZ3 816 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 LRFN5Q96NI6 719 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 GPR78Q96P69 363 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 PCMTD2Q9NV79 361 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 INTS7Q9NVH2 962 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 ARL15Q9NXU5 204 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 UTP6Q9NYH9 597 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 EURLQ9NYK6 297 aa18.71■□□□□ 0.59
SHKBP1-221ENST00000599833 GUCA1CO95843 209 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 LIFP15018 202 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 NPPBP16860 134 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 CRABP2P29373 138 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 CMPK1P30085 196 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 DEKP35659 375 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 SLC26A3P40879 764 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 SLC6A12P48065 614 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 SLC12A2P55011 1212 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 ITGA1P56199 1179 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 ABHD18Q0P651 414 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 NAE1Q13564 534 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 CSHL1Q14406 222 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 SLC29A2Q14542 456 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 COL28A1Q2UY09 1125 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 C18orf21Q32NC0 220 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 ADAMTSL2Q86TH1 951 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 MCATQ8IVS2 390 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 KIAA1191Q96A73 305 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 PYCR2Q96C36 320 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 ATOH8Q96SQ7 321 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 CPNE5Q9HCH3 593 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 MRPS30Q9NP92 439 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 CCDC177Q9NQR7 707 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 ANKMY1Q9P2S6 941 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 CTNNAL1Q9UBT7 734 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 PLCL2Q9UPR0 1127 aa18.7■□□□□ 0.58
SHKBP1-221ENST00000599833 KALRNO60229 2985 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 SPENQ96T58 3664 aaKnown RBP18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 LOC105369274A0A096LPK9 316 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 LOC102723532A0A0G2JNH3 316 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 FITM1A5D6W6 292 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 TAPBPO15533 448 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 MED26O95402 600 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 CAPN1P07384 714 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 ATP6V0D1P61421 351 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 ABATP80404 500 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 COL9A2Q14055 689 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 TGFBIQ15582 683 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms