RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CTAGE8P0CG41 777 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 ECHS1P30084 290 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CMPK1P30085 196 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 TAS2R39P59534 338 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CYP4F2P78329 520 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 MC1RQ01726 317 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 RELAQ04206 551 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 PRDX1Q06830 199 aaKnown RBP15.48■□□□□ 0.07
TRIM28-213ENST00000598355 PPP1R3AQ16821 1122 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 LINC00303Q3SY05 128 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 GLE1Q53GS7 698 aaKnown RBP15.48■□□□□ 0.07
TRIM28-213ENST00000598355 ZC3H12BQ5HYM0 836 aaKnown RBP15.48■□□□□ 0.07
TRIM28-213ENST00000598355 ICE2Q659A1 982 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 LCN10Q6JVE6 187 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 SBSNQ6UWP8 590 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 C3orf62Q6ZUJ4 267 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CTAGE6Q86UF2 777 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CTAGE4Q8IX94 777 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 SYTL1Q8IYJ3 562 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 PROKR1Q8TCW9 393 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 MCOLN3Q8TDD5 553 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CDKL2Q92772 493 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CATSPER2Q96P56 530 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 GBP5Q96PP8 586 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 RUFY1Q96T51 708 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 GPR22Q99680 433 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 RBBP8Q99708 897 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CPNE1Q99829 537 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 GPR87Q9BY21 358 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 SPRTNQ9H040 489 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CHST8Q9H2A9 424 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 WDR70Q9NW82 654 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-213ENST00000598355 TAC3Q9UHF0 121 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 SPTA1P02549 2419 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 NKX2-8O15522 239 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 KLK3P07288 261 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 ENO2P09104 434 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 TCN2P20062 427 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 RPA3P35244 121 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 GP5P40197 560 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 AP1S2P56377 157 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 TBPL1P62380 186 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 ABATP80404 500 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 NAB1Q13506 487 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 ZKSCAN8Q15776 578 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 ZXDCQ2QGD7 858 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 FAM199XQ6PEV8 388 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 PAQR7Q86WK9 346 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 MCATQ8IVS2 390 aaKnown RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 CEP97Q8IW35 865 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 PPFIBP2Q8ND30 876 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 N4BP2L2Q92802 583 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 PCSK5Q92824 1860 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 CCDC138Q96M89 665 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 PLCD4Q9BRC7 762 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 DPH7Q9BTV6 452 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 SGPP1Q9BX95 441 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 ACTL8Q9H568 366 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 IKZF3Q9UKT9 509 aa15.47■□□□□ 0.07
TRIM28-213ENST00000598355 NOVA2Q9UNW9 492 aaKnown RBP15.47■□□□□ 0.07
TRIM28-213ENST00000598355 CREG1O75629 220 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 CCNDBP1O95273 360 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 SYF2O95926 243 aaKnown RBP15.46■□□□□ 0.07
TRIM28-213ENST00000598355 ONECUT2O95948 504 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 PTPN4P29074 926 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 STX2P32856 288 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 POU4F1Q01851 419 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF460Q14592 562 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 TBR1Q16650 682 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 KBTBD12Q3ZCT8 623 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 TCTE1Q5JU00 501 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 YOD1Q5VVQ6 348 aaPredicted RBP15.46■□□□□ 0.07
TRIM28-213ENST00000598355 MBOAT1Q6ZNC8 495 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 SYVN1Q86TM6 617 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 CCDC25Q86WR0 208 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 NKAPQ8N5F7 415 aaKnown RBP15.46■□□□□ 0.07
TRIM28-213ENST00000598355 SLC39A7Q92504 469 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 MR1Q95460 341 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 CLIP3Q96DZ5 547 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 ZFYVE21Q9BQ24 234 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 ACAT2Q9BWD1 397 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 FUT8Q9BYC5 575 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 NLNQ9BYT8 704 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 SYNPO2LQ9H987 977 aa15.46■□□□□ 0.07
TRIM28-213ENST00000598355 MRPS30Q9NP92 439 aaKnown RBP15.46■□□□□ 0.07
TRIM28-213ENST00000598355 CCDC177Q9NQR7 707 aaPredicted RBP15.46■□□□□ 0.07
TRIM28-213ENST00000598355 SRPX2O60687 465 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-213ENST00000598355 FURINP09958 794 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 EZRP15311 586 aaKnown RBP15.45■□□□□ 0.06
TRIM28-213ENST00000598355 ITGAXP20702 1163 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 CCND1P24385 295 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 NCF4Q15080 339 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 PTCHD3Q3KNS1 767 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 FRMPD2BQ6IN97 320 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 AGTRAPQ6RW13 159 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 ZNF655Q8N720 491 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-213ENST00000598355 CEP112Q8N8E3 955 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 ADAMTS17Q8TE56 1095 aa15.45■□□□□ 0.06
TRIM28-213ENST00000598355 ANKRD49Q8WVL7 239 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms