RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 HPS4Q9NQG7 708 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 ASAH2Q9NR71 780 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 VAPAQ9P0L0 249 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 ATXN10Q9UBB4 475 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 ZNHIT2Q9UHR6 403 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 C3orf18Q9UK00 162 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 BAG5Q9UL15 447 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 OGDHLQ9ULD0 1010 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 POLR3KQ9Y2Y1 108 aaPredicted RBP7.21□□□□□ -1.26
ZNF540-206ENST00000589117 V9GYQ6 96 aa7.21□□□□□ -1.26
ZNF540-206ENST00000589117 IGLV3-16A0A075B6K0 115 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 TRIM64A6NGJ6 449 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 LEFTY2O00292 366 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 CXCR6O00574 342 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 DLGAP1O14490 977 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 NUAK1O60285 661 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 DFNA5O60443 496 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 UGDHO60701 494 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 E2F6O75461 281 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 MYO1DO94832 1006 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 AP2A2O94973 939 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 SNAP29O95721 258 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 NELFEP18615 380 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PRPS1L1P21108 318 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PRPH2P23942 346 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 GKP32189 559 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 RPS6KA3P51812 740 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 RAD23AP54725 363 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 ADARB1P78563 741 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 CYP4F8P98187 520 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PLIN5Q00G26 463 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PTSQ03393 145 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 SRSF11Q05519 484 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 BIRC2Q13490 618 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 DCTN2Q13561 401 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 KIAA0040Q15053 153 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 ATP13A5Q4VNC0 1218 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 USP39Q53GS9 565 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 RUNDC3AQ59EK9 446 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 SPANXN4Q5MJ08 99 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 RBM48Q5RL73 367 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 FAM219BQ5XKK7 198 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 FAM117BQ6P1L5 589 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 GDPD4Q6W3E5 623 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 GCNT7Q6ZNI0 430 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 GAREM2Q75VX8 874 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 ARHGAP22Q7Z5H3 698 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 CLVS1Q8IUQ0 354 aaPredicted RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 MICU2Q8IYU8 434 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 C8orf59Q8N0T1 100 aaPredicted RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 LZICQ8WZA0 190 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 TMBIM1Q969X1 311 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 TESCQ96BS2 214 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 SLC47A1Q96FL8 570 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 METTL2AQ96IZ6 378 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 MAGED4Q96JG8 741 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 CNDP2Q96KP4 475 aaKnown RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 RNF208Q9H0X6 261 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 CXorf21Q9HAI6 301 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PAK6Q9NQU5 681 aaPredicted RBP7.2□□□□□ -1.26
ZNF540-206ENST00000589117 TMEM39AQ9NV64 488 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 DNAJC11Q9NVH1 559 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PDE10AQ9Y233 779 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 TRIM17Q9Y577 477 aa7.2□□□□□ -1.26
ZNF540-206ENST00000589117 PLOD2O00469 737 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 RFXANKO14593 260 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 KHNYNO15037 678 aaKnown RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 PER2O15055 1255 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 TGM5O43548 720 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ZNF821O75541 412 aaPredicted RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 PDYNP01213 254 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ALPLP05186 524 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 SPATA31D3P0C874 917 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 XPAP23025 273 aaPredicted RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 SLC5A2P31639 672 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 CCR7P32248 378 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 TRPC1P48995 793 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 HLCSP50747 726 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 HNRNPFP52597 415 aaKnown RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 YBX1P67809 324 aaKnown RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ZXDBP98169 803 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ABHD18Q0P651 414 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 TOP3AQ13472 1001 aaPredicted RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 BOP1Q14137 746 aaKnown RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 CBX2Q14781 532 aaPredicted RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 PLA2G4EQ3MJ16 856 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ARHGAP15Q53QZ3 475 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 LIPJQ5W064 366 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 FRG2Q64ET8 278 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 SPATA31D4Q6ZUB0 917 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 THAP5Q7Z6K1 395 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 TSPAN33Q86UF1 283 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 HIPK1Q86Z02 1210 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ADGRG2Q8IZP9 1017 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 CMTM8Q8IZV2 173 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 BEND7Q8N7W2 519 aaPredicted RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 L3MBTL4Q8NA19 623 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 ZNF548Q8NEK5 533 aaPredicted RBP7.19□□□□□ -1.26
ZNF540-206ENST00000589117 VPS37AQ8NEZ2 397 aa7.19□□□□□ -1.26
ZNF540-206ENST00000589117 LKAAEAR1Q8TD35 194 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms