RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SOX2P48431 317 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 SULT1E1P49888 294 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 ZNF75DP51815 510 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 ELP6Q0PNE2 266 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 TP53BP2Q13625 1128 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 LARS2Q15031 903 aaKnown RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 UGCGQ16739 394 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 DUSP6Q16828 381 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 SHROOM1Q2M3G4 852 aaPredicted RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 CCDC183Q5T5S1 534 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 CES4AQ5XG92 561 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 PAPD4Q6PIY7 484 aaKnown RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 NAPRTQ6XQN6 538 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 POLNQ7Z5Q5 900 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 WDR53Q7Z5U6 358 aaPredicted RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 PIGWQ7Z7B1 504 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 CCDC190Q86UF4 302 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 ZNF410Q86VK4 478 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 LGI4Q8N135 537 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 LNX2Q8N448 690 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 BEST2Q8NFU1 509 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 P2RX5Q93086 422 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 DTNBP1Q96EV8 351 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 WBP1Q96G27 269 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 C12orf42Q96LP6 360 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 UROC1Q96N76 676 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 LRRC3BQ96PB8 259 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 GATA5Q9BWX5 397 aaPredicted RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 SEMA4CQ9C0C4 833 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 TLE6Q9H808 572 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 TMEM161AQ9NX61 479 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 TESQ9UGI8 421 aaKnown RBP5.6□□□□□ -1.51
VPS53-219ENST00000576019 NDRG3Q9UGV2 375 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 RNF150Q9ULK6 438 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 KCNK6Q9Y257 313 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 HIVEP3Q5T1R4 2406 aa5.6□□□□□ -1.51
VPS53-219ENST00000576019 ANKHD1Q8IWZ3 2542 aaKnown RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 CLEC18AA5D8T8 446 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 UBXN8O00124 270 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CACNB4O00305 520 aaPredicted RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 VWA5AO00534 786 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 RRHO14718 337 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 MAP2K7O14733 419 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 PLPP2O43688 288 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 ACSL3O95573 720 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 SERPING1P05155 500 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 TFPIP10646 304 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 HSPA5P11021 654 aaKnown RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 EIF2S2P20042 333 aaKnown RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 ACAT1P24752 427 aaKnown RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 SERPINH1P50454 418 aaKnown RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 GALK2Q01415 458 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 GAD2Q05329 585 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 GAMTQ14353 236 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CEBPEQ15744 281 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 MAPK11Q15759 364 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CDO1Q16878 200 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 TAF1BQ53T94 588 aaPredicted RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 ZNF789Q5FWF6 425 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 PLAC9Q5JTB6 97 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 PCID2Q5JVF3 399 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 KIAA1755Q5JYT7 1200 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 TXNRD3NBQ6F5E7 133 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CLEC18BQ6UXF7 455 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CCDC73Q6ZRK6 1079 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 ARMCX2Q7L311 632 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 BATF2Q8N1L9 274 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 BANPQ8N9N5 519 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CLEC18CQ8NCF0 446 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 CCNYQ8ND76 341 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 EXOC6Q8TAG9 804 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 RIT1Q92963 219 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 TOP1MTQ969P6 601 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 DACT3Q96B18 629 aaPredicted RBP5.59□□□□□ -1.51
VPS53-219ENST00000576019 AP2M1Q96CW1 435 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 SPDL1Q96EA4 605 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 EEF2KMTQ96G04 330 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 TRIM4Q9C037 500 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 FN3KQ9H479 309 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 COQ10BQ9H8M1 238 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 KLHL1Q9NR64 748 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 EXTL2Q9UBQ6 330 aa5.59□□□□□ -1.51
VPS53-219ENST00000576019 PLXNB3Q9ULL4 1909 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 A0A096LPK6 155 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 C13orf42A0A1B0GVH6 325 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 KANSL1LA0AUZ9 987 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 TMEM202A6NGA9 273 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 SDR42E2A6NKP2 422 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 C4orf47A7E2U8 309 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 AP3B1O00203 1094 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CLDN4O14493 209 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CTDSPLO15194 276 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 NOBOXO60393 691 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 KLHL41O60662 606 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 PGLSO95336 258 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 OPN1MWP04001 364 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 LCATP04180 440 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 PGK2P07205 417 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 OPN1MW2P0DN77 364 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms