RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 USH1CQ9Y6N9 552 aa23.21■■□□□ 1.31
ATPAF1-213ENST00000574428 CLGNO14967 610 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 SNX3O60493 162 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 CLDN9O95484 217 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 JUNP05412 331 aaKnown RBP23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 RETP07949 1114 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 EBLN1P0CF75 366 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 IRF8Q02556 426 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 PDCD2Q16342 344 aaPredicted RBP23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 XKR6Q5GH73 641 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 CATSPEREQ5SY80 951 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 KANK2Q63ZY3 851 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 TMPRSS11BQ86T26 416 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 WDR75Q8IWA0 830 aaKnown RBP23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 SLC5A11Q8WWX8 675 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 PCBD2Q9H0N5 130 aa23.2■■□□□ 1.3
ATPAF1-213ENST00000574428 MATN2O00339 956 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 SKAP2O75563 359 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 CAPN1P07384 714 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 FGF4P08620 206 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 CDH1P12830 882 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 TCHHL1Q5QJ38 904 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 FAM20CQ8IXL6 584 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 CLYBLQ8N0X4 340 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 OR2A1Q8NGT9 310 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 OR4C6Q8NH72 309 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 PPP1R36Q96LQ0 422 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 PCDHB11Q9Y5F2 797 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 RNF215Q9Y6U7 377 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 LNP1A1A4G5 178 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 ISM1B1AKI9 464 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 PRICKLE3O43900 615 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 ALPPL2P10696 532 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 HGFP14210 728 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 POLR2CP19387 275 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 CD22P20273 847 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 VARSP26640 1264 aaKnown RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 ATXN3P54252 364 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 AQP5P55064 265 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 DOC2AQ14183 400 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 UGT3A2Q3SY77 523 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 VWA5B1Q5TIE3 1220 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 ZCCHC8Q6NZY4 707 aaKnown RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 SLCO4C1Q6ZQN7 724 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 C17orf64Q86WR6 236 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 METTL6Q8TCB7 284 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 ATOH1Q92858 354 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 SLC38A3Q99624 504 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 DUSP23Q9BVJ7 150 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 FAM86C1Q9NVL1 165 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 KLHL14Q9P2G3 628 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 TRPS1Q9UHF7 1281 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 DNAJC15Q9Y5T4 150 aa23.19■■□□□ 1.3
ATPAF1-213ENST00000574428 CABIN1Q9Y6J0 2220 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 WDR87Q6ZQQ6 2873 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 A0A0G2JND7 137 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 PIPSLA2A3N6 862 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 ZNF195O14628 629 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 FFAR3O14843 346 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 HDAC3O15379 428 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 GPR42O15529 346 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 WFS1O76024 890 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 UROSP10746 265 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 TYRP1P17643 537 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 ICE2Q659A1 982 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 AFAP1L2Q8N4X5 818 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 EID2Q8N6I1 236 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 L3MBTL4Q8NA19 623 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 NUF2Q9BZD4 464 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 UCK1Q9HA47 277 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 KCNK13Q9HB14 408 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 CUEDC1Q9NWM3 386 aaPredicted RBP23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 LRIT1Q9P2V4 623 aa23.18■■□□□ 1.3
ATPAF1-213ENST00000574428 GSAPA4D1B5 854 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 FAM221BA6H8Z2 402 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 RHPN2P1A8MT19 583 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 SIGLEC6O43699 453 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 ENO1P06733 434 aaKnown RBP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 IFT88Q13099 833 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 SF3A2Q15428 464 aaKnown RBP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 CPSF6Q16630 551 aaKnown RBP eCLIP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 TWIST2Q8WVJ9 160 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 RSC1A1Q92681 617 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 FAR2Q96K12 515 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 LDHAL6BQ9BYZ2 381 aaPredicted RBP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 VTI1BQ9UEU0 232 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 BTRCQ9Y297 605 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 PTGDR2Q9Y5Y4 395 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 KCNE1BA0A087WTH5 132 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 SLCO1B7G3V0H7 640 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 ALOX15P16050 662 aaPredicted RBP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 HMOX2P30519 316 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 HK2P52789 917 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 MEF2AQ02078 507 aaPredicted RBP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 PCDH1Q08174 1060 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 SF1Q15637 639 aaKnown RBP23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 NXPE4Q6UWF7 544 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 KIRREL3Q8IZU9 778 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 ANKS4BQ8N8V4 417 aa23.17■■□□□ 1.3
ATPAF1-213ENST00000574428 TWSG1Q9GZX9 223 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms