RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 IGLV3-12A0A075B6K2 115 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 KRT87PA6NCN2 255 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 GOLGA6L6A8MZA4 724 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 ACPPP15309 386 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 PER3P56645 1201 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 OCA2Q04671 838 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 C1QL3Q5VWW1 255 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 LINC00696Q6ZRV3 163 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 SLC34A3Q8N130 599 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 CATSPER1Q8NEC5 780 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 MAGEC3Q8TD91 643 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 SKA2Q8WVK7 121 aaPredicted RBP20.1■□□□□ 0.81
VPS53-216ENST00000574029 MIEF2Q96C03 454 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 SLX1AQ9BQ83 275 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 TRIM56Q9BRZ2 755 aaKnown RBP20.1■□□□□ 0.81
VPS53-216ENST00000574029 DESI2Q9BSY9 194 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 ZNF160Q9HCG1 818 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 SPATA7Q9P0W8 599 aa20.1■□□□□ 0.81
VPS53-216ENST00000574029 OR2A25A4D2G3 310 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 MAP2K7O14733 419 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 NDUFS3O75489 264 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 NMBRP28336 390 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 RPL22P35268 128 aaKnown RBP20.09■□□□□ 0.81
VPS53-216ENST00000574029 SESN2P58004 480 aaPredicted RBP20.09■□□□□ 0.81
VPS53-216ENST00000574029 SNX1Q13596 522 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 NAA25Q14CX7 972 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 MUM1Q2TAK8 710 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 CTSL3PQ5NE16 218 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 FBXO42Q6P3S6 717 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 CNSTQ6PJW8 725 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 FAM180AQ6UWF9 173 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 RNF10Q8N5U6 811 aaKnown RBP20.09■□□□□ 0.81
VPS53-216ENST00000574029 CCDC89Q8N998 374 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 C10orf90Q96M02 699 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 FOPNLQ96NB1 174 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 ZFYVE21Q9BQ24 234 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 EIF2B3Q9NR50 452 aaKnown RBP20.09■□□□□ 0.81
VPS53-216ENST00000574029 C3orf18Q9UK00 162 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 CELSR2Q9HCU4 2923 aa20.09■□□□□ 0.81
VPS53-216ENST00000574029 A0A1W2PQ72 361 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 MATN4O95460 622 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 EIF2S1P05198 315 aaKnown RBP20.08■□□□□ 0.81
VPS53-216ENST00000574029 ZSCAN5DPP0CG00 497 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 ERGP11308 486 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 EMP3P54852 163 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 EIF3BP55884 814 aaKnown RBP20.08■□□□□ 0.81
VPS53-216ENST00000574029 YBX1P67809 324 aaKnown RBP20.08■□□□□ 0.81
VPS53-216ENST00000574029 CRADDP78560 199 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 FASTKQ14296 549 aaKnown RBP20.08■□□□□ 0.81
VPS53-216ENST00000574029 GBX1Q14549 363 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 ZRSR2Q15696 482 aaKnown RBP20.08■□□□□ 0.81
VPS53-216ENST00000574029 PRTGQ2VWP7 1150 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 VWA2Q5GFL6 755 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 KBTBD2Q8IY47 623 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 PRSS58Q8IYP2 241 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 PSMF1Q92530 271 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 C8orf44Q96CB5 159 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 BIRC8Q96P09 236 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 IL22Q9GZX6 179 aa20.08■□□□□ 0.81
VPS53-216ENST00000574029 STOX2Q9P2F5 926 aaPredicted RBP20.08■□□□□ 0.81
VPS53-216ENST00000574029 USP1O94782 785 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 STSP08842 583 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 COX6A1P12074 109 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 FBLP22087 321 aaKnown RBP20.07■□□□□ 0.8
VPS53-216ENST00000574029 ARNTP27540 789 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 ATP5DP30049 168 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 CMPK1P30085 196 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 SOX11P35716 441 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 NPY2RP49146 381 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 CRYBG3Q68DQ2 2970 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 ZNF324BQ6AW86 544 aaPredicted RBP20.07■□□□□ 0.8
VPS53-216ENST00000574029 NDUFAF7Q7L592 441 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 LAPTM4BQ86VI4 370 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 BCORP1Q8N888 145 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 OR1N1Q8NGS0 311 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 DPH7Q9BTV6 452 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 OLAHQ9NV23 265 aa20.07■□□□□ 0.8
VPS53-216ENST00000574029 NSG1A0A0A6YYJ2 146 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 H0YGG7 62 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 AP3B1O00203 1094 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 PHF2O75151 1096 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 PRR35P0CG20 571 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 ERVK-10P10266 1014 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 FDXRP22570 491 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 ARF3P61204 181 aaPredicted RBP20.06■□□□□ 0.8
VPS53-216ENST00000574029 SIX1Q15475 284 aaPredicted RBP20.06■□□□□ 0.8
VPS53-216ENST00000574029 LPGAT1Q92604 370 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 MVB12AQ96EY5 273 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 CABS1Q96KC9 395 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 GRPEL1Q9HAV7 217 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 BFARQ9NZS9 450 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 CDC14AQ9UNH5 594 aa20.06■□□□□ 0.8
VPS53-216ENST00000574029 CPAMD8Q8IZJ3 1885 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 ZGRF1Q86YA3 2104 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 A0A1B0GUH1 482 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 IDSB3KWA1 339 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 NIPSNAP2O75323 286 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 JRKO75564 520 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 FMO4P31512 558 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 EMP2P54851 167 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms