RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TRIM33Q9UPN9 1127 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 BTRCQ9Y297 605 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 PCDHB11Q9Y5F2 797 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 CSNK1G3Q9Y6M4 447 aa13.22□□□□□ -0.29
CCDC40-209ENST00000573474 VCANP13611 3396 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 H0YIV9 168 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 SLC28A1O00337 649 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 FCHO1O14526 889 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 FFAR3O14843 346 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 GPR42O15529 346 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ARRB1P49407 418 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 HTR6P50406 440 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 NUBP1P53384 320 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ZNF33BQ06732 778 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 GPR18Q14330 331 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 PLCL1Q15111 1095 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ZRSR2Q15696 482 aaKnown RBP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 HIST2H2ACQ16777 129 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 DUOXA1Q1HG43 343 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 XKR7Q5GH72 579 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 PAGE2BQ5JRK9 111 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 SPDYAQ5MJ70 313 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 TCHHL1Q5QJ38 904 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 HIST2H2AA3Q6FI13 130 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 OGFOD3Q6PK18 319 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 LARP4Q71RC2 724 aaKnown RBP eCLIP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 TMPRSS11BQ86T26 416 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 FITM2Q8N6M3 262 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ELF4Q99607 663 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 MYLK2Q9H1R3 596 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ELOVL6Q9H5J4 265 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 AKTIPQ9H8T0 292 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 PELI2Q9HAT8 420 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 TAC3Q9UHF0 121 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ZFP69BQ9UJL9 534 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 ZNF490Q9ULM2 529 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-209ENST00000573474 SH2B3Q9UQQ2 575 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 PTGDR2Q9Y5Y4 395 aa13.21□□□□□ -0.29
CCDC40-209ENST00000573474 TTC28Q96AY4 2481 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SERTM1A2A2V5 107 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 FAM221BA6H8Z2 402 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ERICH4A6NGS2 130 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 E9PBE3 544 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 TNFRSF10AO00220 468 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 GALR2O43603 387 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 PRICKLE3O43900 615 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 DFNA5O60443 496 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 KLHL41O60662 606 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SDC3O75056 442 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 CCNDBP1O95273 360 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 CHRM5P08912 532 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 CDH1P12830 882 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 NCF2P19878 526 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 CD22P20273 847 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 VARSP26640 1264 aaKnown RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 CCR8P51685 355 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ABATP80404 500 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 HHEXQ03014 270 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 PRDX1Q06830 199 aaKnown RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ABRAXAS2Q15018 415 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ZNF423Q2M1K9 1284 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 CATSPEREQ5SY80 951 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 FRG2Q64ET8 278 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ICE2Q659A1 982 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SCIMPQ6UWF3 145 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 PRR23BQ6ZRT6 265 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 TMEM26Q6ZUK4 368 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 TRIM46Q7Z4K8 759 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 C17orf82Q86X59 251 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SFTPA2Q8IWL1 248 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 GBP7Q8N8V2 638 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ABHD11Q8NFV4 315 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 OR2A1Q8NGT9 310 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SELENOMQ8WWX9 145 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 JPH3Q8WXH2 748 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-209ENST00000573474 USP7Q93009 1102 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 UBE2E3Q969T4 207 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SLC22A18Q96BI1 424 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 TUBGCP3Q96CW5 907 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 REPS1Q96D71 796 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ERP27Q96DN0 273 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 FRG2BQ96QU4 278 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 ACAT2Q9BWD1 397 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 NMUR2Q9GZQ4 415 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 UCK1Q9HA47 277 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 UCKL1Q9NWZ5 548 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 PCDHGA11Q9Y5H2 935 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 SPAG17Q6Q759 2223 aa13.2□□□□□ -0.3
CCDC40-209ENST00000573474 FANCMQ8IYD8 2048 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 ATP6AP2A0A1C7CYW4 349 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 FAM86C2PA6NEL3 165 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 UBDO15205 165 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 RGS14O43566 566 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 NOBOXO60393 691 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 ATP6AP2O75787 350 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 PDYNP01213 254 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 CFIP05156 583 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 LBPP18428 481 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 CXCR2P25025 360 aa13.19□□□□□ -0.3
CCDC40-209ENST00000573474 PSMB5P28074 263 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms