RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 JPH3Q8WXH2 748 aaPredicted RBP19.86■□□□□ 0.77
VPS53-210ENST00000571456 VPS11Q9H270 941 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 SEMA6CQ9H3T2 930 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 UTP6Q9NYH9 597 aaKnown RBP19.86■□□□□ 0.77
VPS53-210ENST00000571456 STOX2Q9P2F5 926 aaPredicted RBP19.86■□□□□ 0.77
VPS53-210ENST00000571456 TMCO1Q9UM00 188 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 PLAGL1Q9UM63 463 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 PCDHB11Q9Y5F2 797 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 PCDHGA8Q9Y5G5 932 aa19.86■□□□□ 0.77
VPS53-210ENST00000571456 A0A0J9YY10 115 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 NPEPPSL1A6NEC2 478 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 E7ENX8 843 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 CDC7O00311 574 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 KERAO60938 352 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 IPO13O94829 963 aaKnown RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 MT-ND3P03897 115 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 GSTA1P08263 222 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 HRH2P25021 359 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 PGGT1BP53609 377 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 ABATP80404 500 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 TAP2Q03519 686 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 TSNQ15631 228 aaKnown RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 TMTC4Q5T4D3 741 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 B3GNT8Q7Z7M8 397 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 ISCA2Q86U28 154 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 BPHLQ86WA6 291 aaPredicted RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 GPSM1Q86YR5 675 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 CENPLQ8N0S6 344 aaPredicted RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 EXD3Q8N9H8 876 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 LMNTD1Q8N9Z9 388 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 OR2A14Q96R47 310 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 CNOT10Q9H9A5 744 aaKnown RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 CCDC177Q9NQR7 707 aaPredicted RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 LGALS13Q9UHV8 139 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 PLAAQ9Y263 795 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 BTRCQ9Y297 605 aa19.85■□□□□ 0.77
VPS53-210ENST00000571456 UTP20O75691 2785 aaKnown RBP19.85■□□□□ 0.77
VPS53-210ENST00000571456 PRICKLE3O43900 615 aaPredicted RBP19.84■□□□□ 0.77
VPS53-210ENST00000571456 RFPL1O75677 317 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 S100BP04271 92 aaPredicted RBP19.84■□□□□ 0.77
VPS53-210ENST00000571456 MSL3P1P0C860 447 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 UGT2B7P16662 529 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 NELFEP18615 380 aaKnown RBP19.84■□□□□ 0.77
VPS53-210ENST00000571456 KRT15P19012 456 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 TFEBP19484 476 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 IMPA1P29218 277 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 RPA3P35244 121 aaPredicted RBP19.84■□□□□ 0.77
VPS53-210ENST00000571456 ARL4DP49703 201 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 HSD11B2P80365 405 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 TGFBIQ15582 683 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 CAPN13Q6MZZ7 669 aaPredicted RBP19.84■□□□□ 0.77
VPS53-210ENST00000571456 AGTRAPQ6RW13 159 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 LRIG3Q6UXM1 1119 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 CCDC81Q6ZN84 652 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 FAM92BQ6ZTR7 304 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 RAB11FIP2Q7L804 512 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 CLEC14AQ86T13 490 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 MZB1Q8WU39 189 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 ZUFSPQ96AP4 578 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 SLC41A2Q96JW4 573 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 IL17FQ96PD4 163 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 MIPEPQ99797 713 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 NUDT4Q9NZJ9 180 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 TMEM9Q9P0T7 183 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 TBK1Q9UHD2 729 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 DCDC2Q9UHG0 476 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 RNF112Q9ULX5 631 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 KLK4Q9Y5K2 254 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 KIF26BQ2KJY2 2108 aa19.84■□□□□ 0.77
VPS53-210ENST00000571456 B4E171 279 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 TARM1B6A8C7 271 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 PLD2O14939 933 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 SNRNP200O75643 2136 aaKnown RBP19.83■□□□□ 0.77
VPS53-210ENST00000571456 CMPK1P30085 196 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 TSPAN7P41732 249 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 RAB15P59190 212 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 SF1Q15637 639 aaKnown RBP19.83■□□□□ 0.77
VPS53-210ENST00000571456 BEND6Q5SZJ8 279 aaPredicted RBP19.83■□□□□ 0.77
VPS53-210ENST00000571456 SULT1C3Q6IMI6 304 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 LRRC56Q8IYG6 542 aaPredicted RBP19.83■□□□□ 0.77
VPS53-210ENST00000571456 IQCKQ8N0W5 287 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 FBXO39Q8N4B4 442 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 PDPRQ8NCN5 879 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 OR56A3Q8NH54 315 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 FLVCR1-AS1Q8TAF5 88 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 EPS8L3Q8TE67 593 aaKnown RBP19.83■□□□□ 0.77
VPS53-210ENST00000571456 KCTD4Q8WVF5 259 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 NXNL1Q96CM4 212 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 TCTN2Q96GX1 697 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 MAP3K3Q99759 626 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 EGFL8Q99944 293 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 HAUS8Q9BT25 410 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 STARD5Q9NSY2 213 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 SPHK1Q9NYA1 384 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 SENP1Q9P0U3 644 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 KLHL3Q9UH77 587 aa19.83■□□□□ 0.77
VPS53-210ENST00000571456 RELNP78509 3460 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 GGT5P36269 586 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 SLCO1A2P46721 670 aa19.82■□□□□ 0.76
VPS53-210ENST00000571456 NFKB2Q00653 900 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms