RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 HNMTP50135 292 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ALDH18A1P54886 795 aaKnown RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 MAGOHP61326 146 aaKnown RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 PRDX1Q06830 199 aaKnown RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 SPIDRQ14159 915 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 PFKFB4Q16877 469 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 UNC50Q53HI1 259 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CCDC157Q569K6 752 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ICE2Q659A1 982 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 IRGCQ6NXR0 463 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 LCTLQ6UWM7 567 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ZYG11AQ6WRX3 759 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 RBM44Q6ZP01 1051 aaKnown RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 SLCO4C1Q6ZQN7 724 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 TMPRSS7Q7RTY8 843 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 THOC6Q86W42 341 aaKnown RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 PAQR7Q86WK9 346 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 FAM129CQ86XR2 697 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 SYTL1Q8IYJ3 562 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CHCHD4Q8N4Q1 142 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 PTGR2Q8N8N7 351 aaPredicted RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 RCBTB1Q8NDN9 531 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 OR4K1Q8NGD4 311 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 WDR48Q8TAF3 677 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ZNF483Q8TF39 744 aaPredicted RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 NEIL2Q969S2 332 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ATP6V1G3Q96LB4 118 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 FAM111AQ96PZ2 611 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 TMEM237Q96Q45 408 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CD180Q99467 661 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 MIPEPQ99797 713 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ACAT2Q9BWD1 397 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CD244Q9BZW8 370 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CHRNA10Q9GZZ6 450 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 KLHL25Q9H0H3 589 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 ZNF768Q9H5H4 540 aaKnown RBP8.94□□□□□ -0.98
VPS35-211ENST00000569950 ENAMQ9NRM1 1142 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CD274Q9NZQ7 290 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 SENP1Q9P0U3 644 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 PCTPQ9UKL6 214 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 SLC22A14Q9Y267 594 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 CFAP47Q6ZTR5 3102 aa8.94□□□□□ -0.98
VPS35-211ENST00000569950 KCNE1BA0A087WTH5 132 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 A0A0J9YY10 115 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 GSAPA4D1B5 854 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 SUPT3HB4E1H0 165 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 H3BQF6 201 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 STX16-NPEPL1H3BU86 382 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 MATN2O00339 956 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 OR7A17O14581 309 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 STX16O14662 325 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 TOX3O15405 576 aaPredicted RBP8.93□□□□□ -0.98
VPS35-211ENST00000569950 CSO75390 466 aaKnown RBP8.93□□□□□ -0.98
VPS35-211ENST00000569950 SUPT3HO75486 399 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 WFS1O76024 890 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 AMD1P17707 334 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 NELFEP18615 380 aaKnown RBP8.93□□□□□ -0.98
VPS35-211ENST00000569950 ETV5P41161 510 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 CCR10P46092 362 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 SLC18A1P54219 525 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 PRKAA2P54646 552 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 SH3BP2P78314 561 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 CSNK1G2P78368 415 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 TRAF3Q13114 568 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 KCNAB1Q14722 419 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 CATSPEREQ5SY80 951 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 PRAMEF13Q5VWM6 474 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 FBXO42Q6P3S6 717 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 TTC23LQ6PF05 361 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 KLHL35Q6PF15 583 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 FRA10AC1Q70Z53 315 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 CROCCP2Q86T23 111 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 PLXDC1Q8IUK5 500 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 CARFQ8N187 725 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 D2HGDHQ8N465 521 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 FBXO39Q8N4B4 442 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 ARHGEF39Q8N4T4 335 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 DNAJC22Q8N4W6 341 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 ZNF740Q8NDX6 193 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 ARMC2Q8NEN0 867 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 ABHD11Q8NFV4 315 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 ALKBH8Q96BT7 664 aaKnown RBP8.93□□□□□ -0.98
VPS35-211ENST00000569950 L3HYPDHQ96EM0 354 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 WDR34Q96EX3 536 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 LIN37Q96GY3 246 aaPredicted RBP8.93□□□□□ -0.98
VPS35-211ENST00000569950 SCYL1Q96KG9 808 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 ZNF285Q96NJ3 590 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 FCRL4Q96PJ5 515 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 DPYSL5Q9BPU6 564 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 MECRQ9BV79 373 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 AICDAQ9GZX7 198 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 GSTO2Q9H4Y5 243 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 TNFRSF12AQ9NP84 129 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 CCDC177Q9NQR7 707 aaPredicted RBP8.93□□□□□ -0.98
VPS35-211ENST00000569950 C1GALT1Q9NS00 363 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 OXSMQ9NWU1 459 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 OCIAD1Q9NX40 245 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 COPG2Q9UBF2 871 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 KLHL3Q9UH77 587 aa8.93□□□□□ -0.98
VPS35-211ENST00000569950 LNPEPQ9UIQ6 1025 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms